View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6409_low_14 (Length: 407)
Name: NF6409_low_14
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 6958299 - 6958665
Alignment:
| Q |
1 |
gtaacattatattgtaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcaatataagtgttattgtgat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6958299 |
gtaacattatattgcaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcagtataagtgttattgtgat |
6958398 |
T |
|
| Q |
101 |
ttttggcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958399 |
ttttggcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtctta |
6958498 |
T |
|
| Q |
201 |
ctcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaatgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958499 |
ctcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaatgat |
6958598 |
T |
|
| Q |
301 |
gtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958599 |
gtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
6958665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
151 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
246 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | |||||||| |||||||| ||||||| |||||| || ||||| | |||||||||||||||||| |
|
|
| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
|
| Q |
247 |
t |
247 |
Q |
| |
|
| |
|
|
| T |
31081843 |
t |
31081843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University