View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_17 (Length: 365)
Name: NF6409_low_17
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_17 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 1376732 - 1377072
Alignment:
| Q |
1 |
acaaagtgtaaattgataagaatcactattatgttatgtcaacatagccaaacaaagatcaatttacgttcaattcatttttagtcaaaataaatttaga |
100 |
Q |
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| T |
1376732 |
acaaagtgtaaattgataagaatcaccattatgttaggtcaacatagtcaaacatagatcaatttacgttcaattcatttttagtcaaaataaatttaga |
1376831 |
T |
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| Q |
101 |
taaatctaattttattagaatcaattctagttaccgcaaaatcagtcacacgctttcaaccatgttcagccttctagtggtttacatttggttaataagt |
200 |
Q |
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| T |
1376832 |
taaatccaattttattagaatcaattctagttatcgcaaaatcagtcacacgctttcaaccatgtttagacttctagtggtttacatttggttaataagt |
1376931 |
T |
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| Q |
201 |
taagagaaaagttatgtaataattaaatatttggacataatggaaggttcgttgcacatttgattgatgatgttaaaatttaatcttggtaatggtttaa |
300 |
Q |
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| T |
1376932 |
taagagaaaagttatgtaataattaaatatttggacataatggaaggttcgttgcacatttggttgatgatgttaaaatttaatcttggtaatggtttaa |
1377031 |
T |
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| Q |
301 |
gacaataacaaaaagtttcaatggtggaccaattttatgtt |
341 |
Q |
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| T |
1377032 |
gacaaaaacaaaaagtttcaatggtggaccaattttatgtt |
1377072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 31190634 - 31190666
Alignment:
| Q |
333 |
ttttatgttggcttaattgcacttttggacccc |
365 |
Q |
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| T |
31190634 |
ttttaagttggcttaattgcacttttggacccc |
31190666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 1814967 - 1814999
Alignment:
| Q |
333 |
ttttatgttggcttaattgcacttttggacccc |
365 |
Q |
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| T |
1814967 |
ttttattttggcttaattgcacttttggacccc |
1814999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Complemental strand, 3212470 - 3212442
Alignment:
| Q |
337 |
atgttggcttaattgcacttttggacccc |
365 |
Q |
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| T |
3212470 |
atgttggcttaattgcacttttggacccc |
3212442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Complemental strand, 6183300 - 6183272
Alignment:
| Q |
337 |
atgttggcttaattgcacttttggacccc |
365 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6183300 |
atgttggcttaattgcacttttggacccc |
6183272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 8770785 - 8770753
Alignment:
| Q |
333 |
ttttatgttggcttaattgcacttttggacccc |
365 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
8770785 |
ttttattttggcttaattgcacttttggacccc |
8770753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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