View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_18 (Length: 350)
Name: NF6409_low_18
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 32189965 - 32189636
Alignment:
| Q |
7 |
gaagcataggcatggaaacatcgacccaaaggcaacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaaccaaggcttcaaggtaggaatt |
106 |
Q |
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| T |
32189965 |
gaagaataggcatggaaacatcgacccaaaggcaacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaactaaggcttcaaggtaggaatt |
32189866 |
T |
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| Q |
107 |
agagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcactgaagttgatttttcgcgaaaatcattggatgtgaactctatgttg |
206 |
Q |
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| T |
32189865 |
agagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcgctgaagttgatttttcgcgaaaatcattggatgtgaactctatgttg |
32189766 |
T |
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| Q |
207 |
gggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189765 |
gggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgt |
32189666 |
T |
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| Q |
307 |
ctgagttgatgatttctgacgggaaataat |
336 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32189665 |
ctgagttgatgatttctgacgggaaataat |
32189636 |
T |
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