View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_19 (Length: 334)
Name: NF6409_low_19
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 982314 - 982627
Alignment:
| Q |
11 |
acatttgagatcactttttctggagggaattctaatttgtttgccactacatcaataattctttggtttgcctacatttgtcaacaagtaaatagttaat |
110 |
Q |
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| T |
982314 |
acatttgatatcactttttctggagggaattctaatttgtttgccactacaccaataattctttggtttgcctacatttgtcaacaagtaaatagttaat |
982413 |
T |
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| Q |
111 |
tatatttataagcatggtgtaaccaacctttttctctaatcaaaaagttaattaccaaaaaat-------acatacctgatggagaagtaaccaatcaat |
203 |
Q |
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| T |
982414 |
tatatttataagcatggtgtaaccaacctttttctctaatcaaaaagttaattaccaaaaaatgattttcacatacctgatggagaagtaaccaatcaat |
982513 |
T |
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| Q |
204 |
gctggatgcagatagaccagccttttgaagtgctgactcaattgactttggcacattctgtatagcaaatttaaacactactttgccattcatatgtatg |
303 |
Q |
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| T |
982514 |
gctggatgcagatagaccagccttttgaagtgctgactcaattgactttggcacattctgtatagcaaatttaaacactactttgccattcatatgtatg |
982613 |
T |
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| Q |
304 |
catgaatatgaaca |
317 |
Q |
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| T |
982614 |
catgaatatgaaca |
982627 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 2382442 - 2382390
Alignment:
| Q |
177 |
tacctgatggagaagtaaccaatcaatgctggatgcagatagaccagcctttt |
229 |
Q |
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| T |
2382442 |
tacctgatgtagaagtaaccaatcaatactagatacaggaagaccagcctttt |
2382390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 45320351 - 45320403
Alignment:
| Q |
177 |
tacctgatggagaagtaaccaatcaatgctggatgcagatagaccagcctttt |
229 |
Q |
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| T |
45320351 |
tacctgatgtagaagtaaccaatcaatactagatacaggaagaccagcctttt |
45320403 |
T |
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