View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_20 (Length: 309)
Name: NF6409_low_20
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 41262316 - 41262604
Alignment:
| Q |
15 |
atacataccatttaccaacccattaatgttctcctaactctacttacaatctgatttctagcagccacacctgttaattgaaattcacagttctcatcca |
114 |
Q |
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| T |
41262316 |
atacataccatttaccaacccattaatgttctcctaactctacttacaatctgatttctagcagccacacctgttaattgaaattcacagttctcatcca |
41262415 |
T |
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| Q |
115 |
aaagaaacctgtaaacctcccattcatgctctgatgccaaataccttcctacttcagcctaacacaaagggaattcaaggattataatttttatttatta |
214 |
Q |
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| T |
41262416 |
aaagaaacctgtaaacctcccattcatgctctgatgccaaataccttcctacttcagcctaacacaaagggaattcaaggattataatttttatttatta |
41262515 |
T |
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| Q |
215 |
cctaagtaatagtctaatagataacattcaatgcttattttgaaatctagtaatagttttatagtaataaagacaccacttcttatcac |
303 |
Q |
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| T |
41262516 |
cctaagtaatagtctaatagataacattcaatgcttattttgaaatctagtaatagttttatagtaataaagacaccacttctaatcac |
41262604 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 7464494 - 7464436
Alignment:
| Q |
58 |
ttacaatctgatttctagcagccacacctgttaattgaaattcacagttctcatccaaa |
116 |
Q |
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||||| |||||||||||||| | || |||||||||||||||||||||||||||||||| |
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| T |
7464494 |
ttacagtctgatttctagcaacagcatctgttaattgaaattcacagttctcatccaaa |
7464436 |
T |
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