View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_21 (Length: 299)
Name: NF6409_low_21
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 32391499 - 32391231
Alignment:
| Q |
11 |
cagagagtatgcaatgttgggcacgttgcatttcacactgttcgtgctgttagtgtgcacagcagattgcacgctgtttgtgttacggaaccttataaca |
110 |
Q |
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| T |
32391499 |
cagagattatgcaatgttgggcacgttgcatttcacattgttcgtgctgttagtgtgcacagcagattgcacgctgt--gtgttacggaaccttataaca |
32391402 |
T |
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| Q |
111 |
caaaggttctccaacacaaacatcgtgcaatctgctgtgcacagtaatagaataaacaacagcgacattcaagaaccacctctgcaaggttgcgtgaaat |
210 |
Q |
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| T |
32391401 |
caaaggttctccaacacaaacagcgtgcaatctgctgtgcacagtaatagaataaacaacagcgacattcaagaaccacctctgcaaggttgcgtgaaat |
32391302 |
T |
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| Q |
211 |
gcaacatagacgccgacttcaatcactcattaaactttactagctacggatgttgtatcagaggaacgagg |
281 |
Q |
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| T |
32391301 |
gcaacatagacgccgacttcaatcactcattaaactttactagctacggatgttgcatcagaggaacgagg |
32391231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 32391359 - 32391389
Alignment:
| Q |
64 |
tgtgcacagcagattgcacgctgtttgtgtt |
94 |
Q |
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| T |
32391359 |
tgtgcacagcagattgcacgctgtttgtgtt |
32391389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 26160815 - 26160729
Alignment:
| Q |
174 |
gacattcaagaaccacctctgcaaggttgcgtgaaatgcaacatagacgccgacttcaatcactcattaaactttactagctacggatgttgtatcagag |
273 |
Q |
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| T |
26160815 |
gacattcaggaaccacctctgcaaggttgcgtgaaatgcaacat-------------aatcactcattaaactttactagctacggttgttgcatcagag |
26160729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 26160869 - 26160819
Alignment:
| Q |
23 |
aatgttgggcacgttgcatttcacactgttcgtgctgttagtgtgcacagc |
73 |
Q |
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| T |
26160869 |
aatgttgtgcacgttgcatttcacgcggttcgtgctgttactgtgcacagc |
26160819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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