View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_24 (Length: 251)
Name: NF6409_low_24
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43961346 - 43961586
Alignment:
| Q |
1 |
aacgttatcattttaagtgtaagttaaccaactacttaactctctataatcttcttcactatttttgcgatttttgtttctgacatatggttgtttatca |
100 |
Q |
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| T |
43961346 |
aacgttatcattttaagtgtaagttaaccaactacttaactctctataatcttcttcactatttttgtgatttttgtttctgacatatggttgtttatca |
43961445 |
T |
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| Q |
101 |
cattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggtattattttttctcatcaa |
200 |
Q |
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| T |
43961446 |
cattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggtattattttttctcatcaa |
43961545 |
T |
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| Q |
201 |
gaaacttctttcagcaggatgatgtatatttcttgcctttg |
241 |
Q |
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| T |
43961546 |
gaaacttctttcagcaggatgatgtatatttcttgcctttg |
43961586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 43954670 - 43954740
Alignment:
| Q |
120 |
acaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggtattatttt |
190 |
Q |
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| T |
43954670 |
acaaggaagctaattggatcagctcgattctatggataattttacttatcggccttggaaggtattgtttt |
43954740 |
T |
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