View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_25 (Length: 251)
Name: NF6409_low_25
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 3429248 - 3429003
Alignment:
| Q |
1 |
catcaagtcctacgaagagaaggtccttgtaattatggctgggaatgagaaaccaacattcttggctacccctgtagttttgtccatcattgacaaagat |
100 |
Q |
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| T |
3429248 |
catcaagtcctacgaagagaaggtccttgtaattatggctgggaatgagaaaccaacattcttggctacccctgtagttttttccatcattgacaaagat |
3429149 |
T |
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| Q |
101 |
attgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaaggttcttgttcttcacaacataggcagtgattgtgtttcactagctagt |
200 |
Q |
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| T |
3429148 |
attgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaaggttcttgttcttcacaacataggcagtgattgtgtttcactagctagt |
3429049 |
T |
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| Q |
201 |
tggttagtaaaatcatgtggtagatactagtggtaggtgttagtat |
246 |
Q |
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| T |
3429048 |
tggttagtaaaatcatgtggtagatactagtggtaggtgttagtat |
3429003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 3425756 - 3425544
Alignment:
| Q |
14 |
gaagagaaggtccttgtaattatggctgggaatgagaaaccaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttg |
113 |
Q |
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| T |
3425756 |
gaagagaatatccttgtcattatggctggtaatgagaacccaacattcttggctacccctgtagttttgtccatcattaacaatgaaattgacaaccttg |
3425657 |
T |
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| Q |
114 |
tacttgttccaactacttccacttcacaagaaaatga---aggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaa |
210 |
Q |
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| T |
3425656 |
tacttgttccagctacttccacttcacaagaaaatgaagtaggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaa |
3425557 |
T |
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| Q |
211 |
aatcatgtggtag |
223 |
Q |
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| T |
3425556 |
agtcatgtggtag |
3425544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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