View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6409_low_26 (Length: 248)

Name: NF6409_low_26
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6409_low_26
NF6409_low_26
[»] chr5 (15 HSPs)
chr5 (106-231)||(13556166-13556291)
chr5 (14-111)||(13558050-13558147)
chr5 (102-231)||(35368704-35368833)
chr5 (106-226)||(43540650-43540769)
chr5 (106-212)||(35368782-35368888)
chr5 (102-178)||(2023225-2023301)
chr5 (107-178)||(9872339-9872410)
chr5 (107-178)||(9877454-9877525)
chr5 (107-178)||(39909176-39909247)
chr5 (107-178)||(39904063-39904134)
chr5 (106-212)||(2023170-2023276)
chr5 (107-195)||(43379601-43379689)
chr5 (111-223)||(43402001-43402115)
chr5 (102-153)||(43540664-43540715)
chr5 (102-183)||(43379655-43379736)
[»] chr8 (11 HSPs)
chr8 (106-232)||(43956711-43956837)
chr8 (106-178)||(10340882-10340954)
chr8 (107-178)||(14314826-14314897)
chr8 (107-178)||(14318530-14318601)
chr8 (107-178)||(26986904-26986975)
chr8 (107-178)||(18494092-18494163)
chr8 (107-178)||(26981790-26981861)
chr8 (107-178)||(34108449-34108520)
chr8 (107-231)||(18608513-18608636)
chr8 (106-231)||(1782035-1782157)
chr8 (106-177)||(25953090-25953162)
[»] chr3 (23 HSPs)
chr3 (107-231)||(29827680-29827804)
chr3 (106-208)||(29827620-29827722)
chr3 (107-178)||(1302159-1302230)
chr3 (107-178)||(4050026-4050097)
chr3 (107-178)||(4055160-4055231)
chr3 (107-178)||(10672853-10672924)
chr3 (107-178)||(10677966-10678037)
chr3 (107-178)||(31076317-31076388)
chr3 (107-178)||(31081422-31081493)
chr3 (106-178)||(49784703-49784775)
chr3 (107-178)||(5481403-5481474)
chr3 (107-178)||(6852867-6852938)
chr3 (107-178)||(6857970-6858041)
chr3 (107-178)||(8458530-8458601)
chr3 (107-178)||(10584773-10584844)
chr3 (107-178)||(10591210-10591281)
chr3 (107-178)||(33702514-33702585)
chr3 (107-178)||(5457926-5457997)
chr3 (107-178)||(8464968-8465039)
chr3 (102-178)||(49784758-49784834)
chr3 (107-166)||(20891354-20891413)
chr3 (107-166)||(20891281-20891340)
chr3 (107-164)||(18023468-18023525)
[»] chr2 (10 HSPs)
chr2 (108-231)||(716532-716655)
chr2 (106-231)||(42780390-42780515)
chr2 (107-178)||(14917297-14917368)
chr2 (107-178)||(17720441-17720512)
chr2 (107-178)||(45120605-45120676)
chr2 (106-212)||(716471-716577)
chr2 (107-178)||(30283365-30283436)
chr2 (109-178)||(20892265-20892333)
chr2 (102-187)||(20892197-20892282)
chr2 (140-178)||(39178850-39178888)
[»] chr1 (21 HSPs)
chr1 (102-231)||(10185902-10186031)
chr1 (106-229)||(13654526-13654649)
chr1 (106-231)||(19311030-19311155)
chr1 (108-232)||(35626398-35626521)
chr1 (106-231)||(1188028-1188153)
chr1 (107-206)||(21431509-21431608)
chr1 (106-178)||(43358960-43359032)
chr1 (106-212)||(21431562-21431668)
chr1 (102-231)||(10186384-10186513)
chr1 (107-178)||(28574515-28574586)
chr1 (107-178)||(28598527-28598598)
chr1 (106-208)||(10186466-10186568)
chr1 (107-178)||(3468286-3468357)
chr1 (106-231)||(16051402-16051527)
chr1 (109-231)||(35653115-35653237)
chr1 (102-177)||(43359015-43359089)
chr1 (106-212)||(35626337-35626442)
chr1 (107-166)||(17414462-17414521)
chr1 (107-179)||(3701379-3701451)
chr1 (144-212)||(10185885-10185953)
chr1 (140-231)||(1188217-1188308)
[»] scaffold0006 (1 HSPs)
scaffold0006 (106-229)||(144287-144410)
[»] chr4 (26 HSPs)
chr4 (102-230)||(25618111-25618239)
chr4 (106-232)||(47071608-47071734)
chr4 (106-231)||(30019717-30019834)
chr4 (106-231)||(54859039-54859164)
chr4 (106-212)||(3409489-3409595)
chr4 (106-232)||(22118924-22119050)
chr4 (106-231)||(14643607-14643732)
chr4 (107-178)||(35091133-35091204)
chr4 (107-178)||(35096246-35096317)
chr4 (102-231)||(34279315-34279445)
chr4 (102-175)||(32429152-32429225)
chr4 (102-178)||(18671102-18671178)
chr4 (106-178)||(32429208-32429280)
chr4 (106-212)||(18671047-18671153)
chr4 (102-178)||(18716752-18716828)
chr4 (106-208)||(25618192-25618294)
chr4 (106-178)||(3424228-3424300)
chr4 (102-178)||(18737425-18737501)
chr4 (106-212)||(34279394-34279500)
chr4 (102-178)||(3409464-3409540)
chr4 (106-178)||(18716697-18716769)
chr4 (106-178)||(18737370-18737442)
chr4 (102-153)||(54859058-54859109)
chr4 (102-153)||(14643626-14643677)
chr4 (102-153)||(22118979-22119030)
chr4 (102-153)||(47071663-47071714)
[»] chr6 (14 HSPs)
chr6 (102-232)||(21936488-21936618)
chr6 (106-211)||(21936568-21936673)
chr6 (106-211)||(24508742-24508847)
chr6 (106-232)||(11183048-11183174)
chr6 (102-228)||(20751944-20752070)
chr6 (106-212)||(20752019-20752125)
chr6 (107-178)||(21275991-21276062)
chr6 (102-232)||(21937838-21937968)
chr6 (106-211)||(21937783-21937888)
chr6 (101-230)||(24508664-24508793)
chr6 (168-231)||(12909533-12909596)
chr6 (168-231)||(12934640-12934703)
chr6 (109-153)||(12909533-12909577)
chr6 (109-153)||(12934640-12934684)
[»] scaffold0005 (2 HSPs)
scaffold0005 (106-231)||(173560-173685)
scaffold0005 (102-153)||(173615-173666)
[»] chr7 (11 HSPs)
chr7 (106-178)||(14610546-14610618)
chr7 (107-178)||(12857007-12857078)
chr7 (107-178)||(26051239-26051310)
chr7 (107-178)||(26056352-26056423)
chr7 (107-178)||(26060598-26060669)
chr7 (107-178)||(26065711-26065782)
chr7 (107-178)||(12851894-12851965)
chr7 (184-231)||(37459784-37459831)
chr7 (106-176)||(5440217-5440287)
chr7 (106-176)||(5449227-5449297)
chr7 (126-223)||(35352190-35352287)
[»] scaffold0223 (1 HSPs)
scaffold0223 (107-178)||(1934-2005)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 13556291 - 13556166
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13556291 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaagcacctatttgcc 13556192  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||||||||    
T  13556191 aaaggttccaatgtatatgaaagatt 13556166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 13558147 - 13558050
Alignment:
Q  14 atatacaaacggatacgaagagaatcctcagtctctctcacagaaaagcattgttcctctagtagtttaaacaattgtcgccccatattatagacttg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13558147 atatacaaacggatacgaagagaatcctcagtctctctcacagaaaagcattgttcctctaatagtttaaacaattgtcgccccatattatagacttg 13558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 35368833 - 35368704
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| |||||||||||||||| | |||||||||||||| |||| |||||||||||||||||||||||| ||||||||| || ||||||||| |||  |||    
T  35368833 tatacacttgaatcaatgctaaggttcattaagcacctctttgtcaaaggttataatcatatacacttaaatcaatgctaaggttcattaagcactcatt 35368734  T
Q  202 tgccaaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||||||||||||    
T  35368733 tgccaaaggttccaatgtatatgaaagatt 35368704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 43540769 - 43540650
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||| |||||| |||| ||||||||||||||||| | |||||||||| ||||||||||||||||||||| | ||  |||||||| ||||  ||||||    
T  43540769 gacttgagtcaatgttatggttcattaagcacctttt-gtcaaaggttatgatcatatacacttgaatcaatactaagattcattaagcacccctttgcc 43540671  T
Q  206 aaaggttccaatgtatatgaa 226  Q
    |||||||||||||||||||||    
T  43540670 aaaggttccaatgtatatgaa 43540650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 35368888 - 35368782
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| ||||||||||||| |||||||||  |||| ||||| ||||||||||||||||||||||| || ||||||||| ||||| |||| |    
T  35368888 gacttgaatcaatgttatgattcattaaacacctttttatcaaatgttatgatcatatacacttgaatcaatgctaaggttcattaagcacctctttgtc 35368789  T
Q  206 aaaggtt 212  Q
    |||||||    
T  35368788 aaaggtt 35368782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 2023225 - 2023301
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  2023225 tatacacttgaatcaatgttatgattcattaagcacccttttgccaaaggttataaccatacacacttgaatcaatg 2023301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 9872410 - 9872339
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  9872410 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 9872339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 9877525 - 9877454
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  9877525 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 9877454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 39909176 - 39909247
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  39909176 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 39909247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 39904063 - 39904134
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||    
T  39904063 acttgaatcaatgccatgattcattaagcactattttgccaaaggttataaccatatatacttgaatcaatg 39904134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 2023170 - 2023276
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||||||||||||||||  |   |||||||| ||||  ||||||    
T  2023170 gacttgaatcaatgttatgattcattaaacacccatttgtcaaaggttatgatcatatacacttgaatcaatgttatgattcattaagcacccttttgcc 2023269  T
Q  206 aaaggtt 212  Q
    |||||||    
T  2023270 aaaggtt 2023276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 43379601 - 43379689
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaaca 195  Q
    ||||||||||||| ||||||||| |||||||  |||| |||||| |||| ||||||||||||||||||||||| |  ||||||||||||    
T  43379601 acttgaatcaatgttatgattcactaagcactcttttaccaaagtttatgatcatatacacttgaatcaatgctacggttcattaaaca 43379689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 43402115 - 43402001
Alignment:
Q  111 gaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacact--tgaatcaatgcaaatgttcattaaacacctatttgccaaa 208  Q
    ||||||||| |||| ||||||||| | |  |||| |||| ||||||||||||||| ||  ||||||||||  || |||||||||||||  ||||| ||||    
T  43402115 gaatcaatgttatggttcattaagtatcaatttgtcaaaagttataatcatatacgctgttgaatcaatgttaacgttcattaaacactcatttgtcaaa 43402016  T
Q  209 ggttccaatgtatat 223  Q
     |||||||| |||||    
T  43402015 tgttccaatatatat 43402001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 43540715 - 43540664
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||| |||||||||||| ||| |||||||||||||||  |||||||||||||    
T  43540715 tatacacttgaatcaatactaagattcattaagcacccctttgccaaaggtt 43540664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 43379655 - 43379736
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaat 183  Q
    |||| |||||||||||||||| | |||||||| || |  ||| ||||| ||||| ||||||||| ||| |||||||| ||||    
T  43379655 tatacacttgaatcaatgctacggttcattaaacatcactttaccaaaagttatgatcatatacgcttaaatcaatgtaaat 43379736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 43956837 - 43956711
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  43956837 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacatttgaatcaatgtaaatgttcattaagcacctatttgcc 43956738  T
Q  206 aaaggttccaatgtatatgaaagattt 232  Q
    |||| ||||||||||||||||||||||    
T  43956737 aaagattccaatgtatatgaaagattt 43956711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 10340954 - 10340882
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  10340954 gacttgaatcaatgctatgattcattaagcacccttttgtcaaaggttatgatcatatacacttgaatcaatg 10340882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 14314897 - 14314826
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  14314897 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 14314826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 14318601 - 14318530
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  14318601 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 14318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 26986975 - 26986904
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  26986975 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 26986904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 18494163 - 18494092
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  18494163 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 18494092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 26981861 - 26981790
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||    
T  26981861 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccgtatatacttgaatcaatg 26981790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 34108449 - 34108520
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  34108449 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 34108520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 18608636 - 18608513
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcca 206  Q
    ||||||||||||| |||| |||||||||||||  ||||||||||||||| | ||||||||||||||||| ||| |  |||||| || ||||  |||||||    
T  18608636 acttgaatcaatgttatggttcattaagcacccctttgccaaaggttatgaacatatacacttgaatcactgctatggttcatcaagcacccctttgcca 18608537  T
Q  207 aaggttccaatgtatatgaaagatt 231  Q
    ||| | ||||| |||||||| ||||    
T  18608536 aagatcccaat-tatatgaatgatt 18608513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 1782035 - 1782157
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||||||   ||| | ||| |||||   ||||||||||||||||||||  |  ||||||||| |||  |||||||    
T  1782035 gacttgaatcaatgttatggttcattaagcacgcattttctaaatgttat---catatacacttgaatcaatgttatggttcattaatcactgatttgcc 1782131  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||  ||||||| ||||    
T  1782132 aaaggttccaatacatatgaatgatt 1782157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 25953162 - 25953090
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaag-gttataatcatatacacttgaatcaat 177  Q
    ||||| |||||||  |||| ||||||||||| | ||||||||||  ||||| |||||||||||||||||||||    
T  25953162 gacttaaatcaattttatggttcattaagcatccttttgccaaaatgttatgatcatatacacttgaatcaat 25953090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 29827680 - 29827804
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcca 206  Q
    |||||||||||||||| | |||||||||||||  |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  29827680 acttgaatcaatgctaaggttcattaagcaccaatttgtcaaatgttataatcatatacacttgaatcaatgcaaaggttcattaaacacctgtttgcca 29827779  T
Q  207 aaggttccaatgtatatgaaagatt 231  Q
    ||||||||||| |||||||||||||    
T  29827780 aaggttccaatctatatgaaagatt 29827804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 29827620 - 29827722
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||||||||||||||||| ||||||||||| |||| | |||| |||||||||||||||| || ||||||||| |||| ||||| |    
T  29827620 gacttgaatcaatgttatgattcattaagcaccattttgccaaagattatgaccatacacacttgaatcaatgctaaggttcattaagcaccaatttgtc 29827719  T
Q  206 aaa 208  Q
    |||    
T  29827720 aaa 29827722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 1302230 - 1302159
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  1302230 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 1302159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 4050026 - 4050097
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  4050026 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 4050097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 4055160 - 4055231
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  4055160 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 4055231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 10672924 - 10672853
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  10672924 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 10672853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 10678037 - 10677966
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  10678037 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 10677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 31076388 - 31076317
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  31076388 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 31076317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 31081493 - 31081422
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  31081493 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 31081422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 49784703 - 49784775
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||    
T  49784703 gacttgaatcaatgttatgattcattaagcacccatttgccaaagcttatgatcatatacacttgaatcaatg 49784775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 5481474 - 5481403
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  5481474 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 5481403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 6852938 - 6852867
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||    
T  6852938 acttgaatcaatgccatgattcatcaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 6852867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 6858041 - 6857970
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||    
T  6858041 acttgaatcaatgccatgattcatcaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 6857970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 8458530 - 8458601
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||    
T  8458530 acttgaatcaatgccatgattcattaaccacccttttgccaaaggttataaccatatatacttgaatcaatg 8458601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 10584844 - 10584773
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||||    
T  10584844 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatatttgaatcaatg 10584773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 10591281 - 10591210
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||    
T  10591281 acttgaatcaatgccatgattcattaagcacccttttaccaaaggttataaccatatatacttgaatcaatg 10591210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 33702585 - 33702514
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||    
T  33702585 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccttatatacttgaatcaatg 33702514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 5457997 - 5457926
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||    
T  5457997 acttgaatcaatgtcatgattcattaagcacccttttgccaagggttataaccatatatacttgaatcaatg 5457926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 8464968 - 8465039
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||    
T  8464968 acttgaatcaatgtcatgattcattaagcaccattttgccaaaggttataaccatatatacttgagtcaatg 8465039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 49784758 - 49784834
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||| ||||||||||||| |||| || |||| ||||| |||||||||| ||||||| ||||||||||||||||||||    
T  49784758 tatacacttgaatcaatgatatggtttattatgcacccttttgccaaatgttataaccatatacacttgaatcaatg 49784834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 20891354 - 20891413
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatataca 166  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||||    
T  20891354 acttgaatcaatgctatggttcattaagcacccttttgccaaaggttatggtcatataca 20891413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 20891281 - 20891340
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatataca 166  Q
    ||||||||||||| |||| ||||||||||| |  ||||||||||||||| ||||||||||    
T  20891281 acttgaatcaatgatatggttcattaagcaaccatttgccaaaggttatgatcatataca 20891340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 18023525 - 18023468
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatata 164  Q
    ||||||||||||| ||||||||||||||||||  ||| |||| |||||| | ||||||    
T  18023525 acttgaatcaatgatatgattcattaagcacccctttaccaacggttatgaccatata 18023468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 716532 - 716655
Alignment:
Q  108 cttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgccaa 207  Q
    ||||||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |    
T  716532 cttgaatcaatgctaagcttcattaagcacccctttaccaaaggttataatcatatacacttgaatcaatgcaaaggtttattaaacacctatttaccta 716631  T
Q  208 aggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||||||    
T  716632 aggttccaatgtatatgaaagatt 716655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 42780390 - 42780515
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||||  |  ||||||||||||||| ||||||||||||||||||||||  |  ||||||||| |||||||||||     
T  42780390 gacttgaatcaatgttatggttcattaagccaccatttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacctatttgct 42780489  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||| ||||||||||||||||||||||    
T  42780490 aaaagttccaatgtatatgaaagatt 42780515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 14917368 - 14917297
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  14917368 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 14917297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 17720512 - 17720441
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||    
T  17720512 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttcaatcaatg 17720441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 45120605 - 45120676
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  45120605 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 45120676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 716471 - 716577
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| || | | |||||| ||||||||||||||||||||| |||||| || ||||||||||||| ||  |||||||| ||||  ||| ||    
T  716471 gacttgaatcaatgttacggtccattaaacacctttttgccaaaggttatgatcatacactcttgaatcaatgctaagcttcattaagcacccctttacc 716570  T
Q  206 aaaggtt 212  Q
    |||||||    
T  716571 aaaggtt 716577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 30283436 - 30283365
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||| |||||| |||||| |||||||||||||    
T  30283436 acttgaatcaatattatggttcattaagcacccttttgccaaagattataaccatatatacttgaatcaatg 30283365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 20892333 - 20892265
Alignment:
Q  109 ttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    ||||||||||| | || ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  20892333 ttgaatcaatgtt-tggttcattaagcacctttttggcaaatgttatgatcatatacacttgaatcaatg 20892265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 20892282 - 20892197
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttc 187  Q
    |||| ||||||||||||| |||| |||||||| |||    |||||||| || || ||||||||||||||||||||| |||||||||    
T  20892282 tatacacttgaatcaatgttatggttcattaatcactcacttgccaaatgtcatgatcatatacacttgaatcaatacaaatgttc 20892197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 39178850 - 39178888
Alignment:
Q  140 ttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  39178850 ttttgccaaaggttataaccatatatacttgaatcaatg 39178888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 10185902 - 10186031
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||| |||| |||    
T  10185902 tatatacttgaatcaatgatatggttcattaagcacctttttgccaaaggttataaccatatacacttgaatcaacgctaaggttcattaagcacccatt 10186001  T
Q  202 tgccaaaggttccaatgtatatgaaagatt 231  Q
    ||| ||||||| ||||||||||||||||||    
T  10186002 tgctaaaggtttcaatgtatatgaaagatt 10186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 13654526 - 13654649
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||| ||| ||||||||| |||||| |||||| |||||||| |||||||||| ||||||||| ||||||||||||    
T  13654526 gacttgaatcaatgttatggttcattaagtacccttttgccaagggttatgatcatacacacttgagtcaatgcaaaagttcattaagcacctatttgcc 13654625  T
Q  206 aaaggttccaatgtatatgaaaga 229  Q
    ||||||||||||||||||||||||    
T  13654626 aaaggttccaatgtatatgaaaga 13654649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 19311030 - 19311155
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||  ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| || ||||||||  ||||  ||||||    
T  19311030 gacttgaatcaatgttatagttcattaagcacccttttaccaaaggttatgatcatatacacttgaatcaatgctaaggttcattatgcacccctttgcc 19311129  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||||||||    
T  19311130 aaaggttccaatgtatatgaaagatt 19311155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 35626398 - 35626521
Alignment:
Q  108 cttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgccaa 207  Q
    ||||||||||||||| | ||||||||  ||||||| | ||||||||||||||||||||||||||||||| ||| | |||||||||  |||||||||||||    
T  35626398 cttgaatcaatgctaaggttcattaaatacctttt-gtcaaaggttataatcatatacacttgaatcaaagcagaagttcattaagtacctatttgccaa 35626496  T
Q  208 aggttccaatgtatatgaaagattt 232  Q
    || ||| ||||||||||||||||||    
T  35626497 agattctaatgtatatgaaagattt 35626521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 1188028 - 1188153
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||| |||| |||| |||||||| ||||  ||||||||||||||| |||||||||||||| |||||||| || ||||||||| || |  ||||||    
T  1188028 gacttgaattaatgttatggttcattaaacacccatttgccaaaggttatgatcatatacacttgtatcaatgctaaggttcattaatcatccttttgcc 1188127  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||| ||||||||||||||||||||||    
T  1188128 aaatgttccaatgtatatgaaagatt 1188153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 21431608 - 21431509
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcca 206  Q
    ||||||||||||| || | ||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  21431608 acttgaatcaatgttaaggttcatcaagcacccatttgccaaaggttataattatatacacttgaatcaatgcaaaaattcattaaacacctatttgcca 21431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 43358960 - 43359032
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  43358960 gacttgaatcaatgctatgattcattaagcacccctttgccaaaggttatgatcatatacacttgaatcaatg 43359032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 21431668 - 21431562
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||| |||||||| |||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||  || |||||| || |||| |||||||    
T  21431668 gacttaaatcaatgttatggttcattaagcacccttttgccaaaggttatgatcatacacacttgaatcaatgttaaggttcatcaagcacccatttgcc 21431569  T
Q  206 aaaggtt 212  Q
    |||||||    
T  21431568 aaaggtt 21431562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 10186513 - 10186384
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||| |||| || |||||| |||| ||||||||  || | ||||||| ||||  ||    
T  10186513 tatacacttgaatcaatgctatggttcattaagcacccttttgccaaaagttacaaccatataaacttcaatcaatgataaggctcattaagcacccctt 10186414  T
Q  202 tgccaaaggttccaatgtatatgaaagatt 231  Q
    ||| ||| ||| ||||||||||||||||||    
T  10186413 tgctaaaagtttcaatgtatatgaaagatt 10186384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 28574515 - 28574586
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  28574515 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 28574586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 28598527 - 28598598
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  28598527 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 28598598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 10186568 - 10186466
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||| |||||||||| |||||||||||||  |||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||  ||||||    
T  10186568 gacttgaaccaatgctatggttcattaagcacccctttgtcaaaggttatgatcatatacacttgaatcaatgctatggttcattaagcacccttttgcc 10186469  T
Q  206 aaa 208  Q
    |||    
T  10186468 aaa 10186466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 3468286 - 3468357
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  3468286 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 3468357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 16051402 - 16051527
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||||||   ||||||||| ||||| ||||||||||||||||||||||| |  |||||||||  | | |||| ||    
T  16051402 gacttgaatcaatgatatggttcattaagcactcatttgccaaatgttatgatcatatacacttgaatcaatgctatggttcattaagtatccatttacc 16051501  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||| |||  |||||||||||| ||||    
T  16051502 aaatgttataatgtatatgaatgatt 16051527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 35653237 - 35653115
Alignment:
Q  109 ttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgccaaa 208  Q
    ||||||||||| |||| ||||||||||||   |||| |||||||||| |||||||||||||||||| || | || |||| |||| ||||  ||| |||||    
T  35653237 ttgaatcaatgatatggttcattaagcactcctttgtcaaaggttatgatcatatacacttgaatcgatcctaaagttcgttaagcaccccttttccaaa 35653138  T
Q  209 ggttccaatgtatatgaaagatt 231  Q
    || |||||| |||||||| ||||    
T  35653137 ggctccaatatatatgaatgatt 35653115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 43359015 - 43359089
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaat 177  Q
    |||| ||||||||||||| |||| ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||    
T  43359015 tatacacttgaatcaatgttatggttcatta-gcacccttttgccaaatgttataaccatatacacttgaatcaat 43359089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 35626337 - 35626442
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||| ||||||| |||| |||||| | |||| |||||||||| ||||| || ||| || ||||||||||||| || |||||||||| |||| |||| |    
T  35626337 gacttgcatcaatgttatggttcatttaacacccttttgccaaaagttatgattatacactcttgaatcaatgctaaggttcattaaatacct-tttgtc 35626435  T
Q  206 aaaggtt 212  Q
    |||||||    
T  35626436 aaaggtt 35626442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 17414521 - 17414462
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatataca 166  Q
    |||||||| |||||||||| ||||||| ||||| ||||||||||||||| ||||| ||||    
T  17414521 acttgaataaatgctatgaatcattaaacacctctttgccaaaggttatgatcatgtaca 17414462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 3701451 - 3701379
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgc 179  Q
    ||||||||||||  |||| ||||||||||| |  ||| ||||||||| | |||| ||||||||||||||||||    
T  3701451 acttgaatcaatattatggttcattaagcatcaatttaccaaaggttgtgatcagatacacttgaatcaatgc 3701379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 10185885 - 10185953
Alignment:
Q  144 gccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgccaaaggtt 212  Q
    ||||| |||||| |||||||| |||||||||||||  |  ||||||||| ||||| |||||||||||||    
T  10185885 gccaagggttatgatcatatatacttgaatcaatgatatggttcattaagcacctttttgccaaaggtt 10185953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 1188217 - 1188308
Alignment:
Q  140 ttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgccaaaggttccaatgtatatgaaagatt 231  Q
    |||||||||||||||| || ||||||||||| |||||||  ||  |||||||| || |  ||||||||| ||||||||  ||| ||||||||    
T  1188217 ttttgccaaaggttatgataatatacacttgtatcaatgttaagattcattaagcatccttttgccaaatgttccaattcatacgaaagatt 1188308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 144287 - 144410
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||| ||| ||||||||| |||||| |||||| |||||||| |||||||||| ||||||||| ||||||||||||    
T  144287 gacttgaatcaatgttatggttcattaagtacccttttgccaagggttatgatcatacacacttgagtcaatgcaaaagttcattaagcacctatttgcc 144386  T
Q  206 aaaggttccaatgtatatgaaaga 229  Q
    ||||||||||||||||||||||||    
T  144387 aaaggttccaatgtatatgaaaga 144410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 25618239 - 25618111
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| ||||||||||||| |||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||  |||  ||    
T  25618239 tatacacttgaatcaatgttatggttcattaagcacccttttgccaaatgttataaccatatacacttgaatcaatgcaaaagttcattaagaacccttt 25618140  T
Q  202 tgccaaaggttccaatgtatatgaaagat 230  Q
    || |||||||| |||||||||||||||||    
T  25618139 tgtcaaaggttacaatgtatatgaaagat 25618111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 47071608 - 47071734
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||| ||| ||||||||||| |  ||||||||||||||| ||||||||||||||||||||||  |  ||||||||| |||| |||||||    
T  47071608 gacttgaatcaatgcaatggttcattaagcatccatttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacccatttgcc 47071707  T
Q  206 aaaggttccaatgtatatgaaagattt 232  Q
    ||||||||||||||||||||| |||||    
T  47071708 aaaggttccaatgtatatgaatgattt 47071734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 30019834 - 30019717
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||| || |||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||       ||    
T  30019834 gacttgaatca-tgttatggttcattaagcacctttttgccaaaggttatgatcatacacacttgaatcaatgcaaaggttcattaagcac-------cc 30019743  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||||||||    
T  30019742 aaaggttccaatgtatatgaaagatt 30019717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 54859164 - 54859039
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||||| |  ||||||||||||||| ||||||||||||||||||||||  |   |||||||| ||||  ||||||    
T  54859164 gacttgaatcaatgttatggttcattaagcatccatttgccaaaggttatgatcatatacacttgaatcaatgttatgtttcattaagcacccttttgcc 54859065  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||| ||||    
T  54859064 aaaggttccaatgtatatgaatgatt 54859039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 3409595 - 3409489
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||  |  |||||||||  |||  ||||||    
T  3409595 gacttgaatcaatgctatgattcattaagcacccctttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagtacccttttgcc 3409496  T
Q  206 aaaggtt 212  Q
    |||||||    
T  3409495 aaaggtt 3409489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 22118924 - 22119050
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||| |||  |||| |||||||||||||  |||||| ||||||   ||||||||||||||||||||||| || ||||||||| |||| |||||||    
T  22118924 gacttgaatgaataatatggttcattaagcacccctttgccgaaggttgcgatcatatacacttgaatcaatgctaaggttcattaagcacccatttgcc 22119023  T
Q  206 aaaggttccaatgtatatgaaagattt 232  Q
    ||||||||||||||| ||||| |||||    
T  22119024 aaaggttccaatgtaaatgaatgattt 22119050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 14643732 - 14643607
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||||| | |||||||| |||   |||| |||| ||||| ||||||||||||||||||||||  || ||||||||| ||||  ||||||    
T  14643732 gacttgaatcaatgctaaggttcattaaacactcctttgtcaaatgttatgatcatatacacttgaatcaatgttaaggttcattaagcacccttttgcc 14643633  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||| ||||    
T  14643632 aaaggttccaatgtatatgaatgatt 14643607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 35091133 - 35091204
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  35091133 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 35091204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 35096246 - 35096317
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  35096246 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 35096317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 34279445 - 34279315
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| |||| |||||||| || | || |||||||||   ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||    
T  34279445 tatacacttaaatcaatgttaaggtttattaagcactcatttgccaaaggttataatcatatacacttgaatcaatgctaaggttcattaagcacccatt 34279346  T
Q  202 tg-ccaaaggttccaatgtatatgaaagatt 231  Q
    || | |||| ||| |||||||||||| ||||    
T  34279345 tgtcaaaagattctaatgtatatgaatgatt 34279315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 32429225 - 32429152
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatca 175  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  32429225 tatacacttgaatcaatgttatgattcattaagcacccttttgccaaatgttataaccatatacacttgaatca 32429152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 18671102 - 18671178
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  18671102 tatacacttgaatcaatgttatggttcattaagcaccattttgccaaaggttataaccatatacacttaaatcaatg 18671178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 32429280 - 32429208
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    ||||||||||||||| |||||||||||||||||  |||| |||||||||| ||||||||||||||||||||||    
T  32429280 gacttgaatcaatgccatgattcattaagcacccctttgtcaaaggttatgatcatatacacttgaatcaatg 32429208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 18671047 - 18671153
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||||||| |||||||||| |  |||| |||||||||||  |||||||||||||||||||||  |  ||||||||| ||||  ||||||    
T  18671047 gacttgaatcaatgctatggttcattaagccctcttttaccaaaggttatcttcatatacacttgaatcaatgttatggttcattaagcaccattttgcc 18671146  T
Q  206 aaaggtt 212  Q
    |||||||    
T  18671147 aaaggtt 18671153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 18716752 - 18716828
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||| ||||||||||||| |||| ||||||||||||  ||| |||||||||||||| ||||||||||||||||||||    
T  18716752 tatacacttgaatcaatgttatggttcattaagcactatttggccaaaggttataaccatatacacttgaatcaatg 18716828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 25618294 - 25618192
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||||||||||||||| |   |||| ||||||||| ||||||||||||||||||||||  |  ||||||||| ||||  ||||||    
T  25618294 gacttgaatcaatgttatgattcattaagcatccagttgcgaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacccttttgcc 25618195  T
Q  206 aaa 208  Q
    |||    
T  25618194 aaa 25618192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 3424300 - 3424228
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    ||||| |||||||| |||| ||||||||||||| |||||||||||||||||| |||| ||| |||||||||||    
T  3424300 gacttaaatcaatgttatggttcattaagcacccttttgccaaaggttataaccatacacatttgaatcaatg 3424228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 18737425 - 18737501
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||| ||||||||||||| |||| ||||||||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  18737425 tatacacttgaatcaatgttatggttcattaagcacaatttagccaaaggttataacaatatacacttgaatcaatg 18737501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 34279500 - 34279394
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| || ||| | |||| |||| ||||||||||| ||||||||||||| ||||||||  || ||| ||||| |||  |||||||    
T  34279500 gacttgaatcaatgttatggttaattgaacacccttttaccaaaggttatgatcatatacacttaaatcaatgttaaggtttattaagcactcatttgcc 34279401  T
Q  206 aaaggtt 212  Q
    |||||||    
T  34279400 aaaggtt 34279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 3409540 - 3409464
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||| ||||||||||||| |||| ||||||||| ||| ||||||||||||||||||  ||| ||| |||||||||||    
T  3409540 tatacacttgaatcaatgttatggttcattaagtacccttttgccaaaggttataactatacacatttgaatcaatg 3409464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 18716697 - 18716769
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| |||| |||||||||| |  |||| ||||| ||||| ||||||||||||||||||||||    
T  18716697 gacttgaatcaatgatatggttcattaagctctcttttaccaaaagttatgatcatatacacttgaatcaatg 18716769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 18737370 - 18737442
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| |||| |||||||||| |  |||| ||||| ||||| ||||||||||||||||||||||    
T  18737370 gacttgaatcaatgatatggttcattaagctctcttttaccaaaagttatgatcatatacacttgaatcaatg 18737442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 54859109 - 54859058
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||| ||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  54859109 tatacacttgaatcaatgttatgtttcattaagcacccttttgccaaaggtt 54859058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 14643677 - 14643626
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||| ||||||||||||| || | ||||||||||||| ||||||||||||||    
T  14643677 tatacacttgaatcaatgttaaggttcattaagcacccttttgccaaaggtt 14643626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 22118979 - 22119030
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||| |||||||||||||||| | |||||||||||||  |||||||||||||    
T  22118979 tatacacttgaatcaatgctaaggttcattaagcacccatttgccaaaggtt 22119030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 47071663 - 47071714
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||| ||||||||||||| |||| |||||||||||||  |||||||||||||    
T  47071663 tatacacttgaatcaatgttatggttcattaagcacccatttgccaaaggtt 47071714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 21936618 - 21936488
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| |||||||| ||| ||| | |||| ||| ||||  |||||||||||| || |||||||| ||||||||||||||||| ||||||||| |||| |||    
T  21936618 tatacacttgaataaattctaaggttcactaaacacccctttgccaaaggtcatgatcatataaacttgaatcaatgcaaaggttcattaagcacccatt 21936519  T
Q  202 tgccaaaggttccaatgtatatgaaagattt 232  Q
    |||||||||||| ||||||||| ||||||||    
T  21936518 tgccaaaggttcaaatgtatataaaagattt 21936488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 21936673 - 21936568
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||| | || ||||| ||||||||  ||||||    
T  21936673 gacttgaatcaatgttatggtttattaagcacctttttgccaaaggttatgatcatatacacttgaataaattctaaggttcactaaacacccctttgcc 21936574  T
Q  206 aaaggt 211  Q
    ||||||    
T  21936573 aaaggt 21936568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 24508847 - 24508742
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||| || ||||||||||||||  ||| ||    
T  24508847 gacttgaatcaatgttatggttcattaagcacccttttgccaaaggttatgatcttatacacttgaattaatgctaaggttcattaaacacccctttacc 24508748  T
Q  206 aaaggt 211  Q
    ||||||    
T  24508747 aaaggt 24508742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 11183174 - 11183048
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||| || |||| |||||||| || |  |||| |||||||||| |||||||||||||||||||| || || |||||||||  |||  ||||||    
T  11183174 gacttgaatcagtgttatggttcattaaacatccctttgtcaaaggttatgatcatatacacttgaatcaaggctaaggttcattaagtacccctttgcc 11183075  T
Q  206 aaaggttccaatgtatatgaaagattt 232  Q
    ||| |||||||||||||||||||||||    
T  11183074 aaatgttccaatgtatatgaaagattt 11183048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 20752070 - 20751944
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| |||||||||||||||| | |||||||| ||||  |||| ||||||||||||| ||||||||||||| |||||| || ||| ||||| |||| |||    
T  20752070 tatacacttgaatcaatgctaaggttcattaaacacccctttgtcaaaggttataataatatacacttgaaccaatgctaaggtttattaagcacccatt 20751971  T
Q  202 tgccaaaggttccaatgtatatgaaag 228  Q
    ||| |||||||  ||||||||||||||    
T  20751970 tgctaaaggttataatgtatatgaaag 20751944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 20752125 - 20752019
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    |||||||||||||| |||| ||||||||||||| ||||| ||||||||||   ||||||||||||||||||||| || ||||||||||||||  |||| |    
T  20752125 gacttgaatcaatgttatggttcattaagcaccattttgtcaaaggttatggccatatacacttgaatcaatgctaaggttcattaaacacccctttgtc 20752026  T
Q  206 aaaggtt 212  Q
    |||||||    
T  20752025 aaaggtt 20752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 21275991 - 21276062
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  21275991 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 21276062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 21937838 - 21937968
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatt 201  Q
    |||| ||||||||||||| ||   || ||||| ||||  ||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||  ||    
T  21937838 tatacacttgaatcaatgataaagttaattaaacaccccttttccaaaggtcatgatcatatacacttgaatcaatgcaaatgttcattaaccacccctt 21937937  T
Q  202 tgccaaaggttccaatgtatatgaaagattt 232  Q
    ||| ||| ||||||||||||| |||| ||||    
T  21937938 tgctaaatgttccaatgtatacgaaatattt 21937968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 21937783 - 21937888
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||  ||| |||||||| |||| |||||||||||||||| ||||||||||||||||||||||  || ||| ||||||||||  ||| ||    
T  21937783 gacttgaatcaatgtgatggttcattaaacacccttttgccaaaggttatgatcatatacacttgaatcaatgataaagttaattaaacaccccttttcc 21937882  T
Q  206 aaaggt 211  Q
    ||||||    
T  21937883 aaaggt 21937888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 24508793 - 24508664
Alignment:
Q  101 ttatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctat 200  Q
    ||||| |||||||| ||||||| | |||||||| ||||  ||| |||||||| || |||||||||||||||||||||||||| ||| ||||| | || ||    
T  24508793 ttatacacttgaattaatgctaaggttcattaaacacccctttaccaaaggtcatgatcatatacacttgaatcaatgcaaaggtttattaagcgcccat 24508694  T
Q  201 ttgccaaaggttccaatgtatatgaaagat 230  Q
    || ||||| ||| |||| ||||||||||||    
T  24508693 ttaccaaatgtttcaatatatatgaaagat 24508664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 12909533 - 12909596
Alignment:
Q  168 ttgaatcaatgcaaatgttcattaaacacctatttgccaaaggttccaatgtatatgaaagatt 231  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  12909533 ttgaatcaatgctaaggttcattaaacacctttttgccaaaggttccaatgtatatgaatgatt 12909596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 12934640 - 12934703
Alignment:
Q  168 ttgaatcaatgcaaatgttcattaaacacctatttgccaaaggttccaatgtatatgaaagatt 231  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  12934640 ttgaatcaatgctaaggttcattaaacacctttttgccaaaggttccaatgtatatgaatgatt 12934703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 12909533 - 12909577
Alignment:
Q  109 ttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||||||||||||| | |||||||| |||||||||||||||||||    
T  12909533 ttgaatcaatgctaaggttcattaaacacctttttgccaaaggtt 12909577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 12934640 - 12934684
Alignment:
Q  109 ttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||||||||||||| | |||||||| |||||||||||||||||||    
T  12934640 ttgaatcaatgctaaggttcattaaacacctttttgccaaaggtt 12934684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 173560 - 173685
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgcc 205  Q
    ||||||||||||||||| | |||||||| |||   |||| |||| ||||| ||||||||||||||||||||||  || ||||||||| ||||  ||||||    
T  173560 gacttgaatcaatgctaaggttcattaaacactcctttgtcaaatgttatgatcatatacacttgaatcaatgttaaggttcattaagcacccttttgcc 173659  T
Q  206 aaaggttccaatgtatatgaaagatt 231  Q
    ||||||||||||||||||||| ||||    
T  173660 aaaggttccaatgtatatgaatgatt 173685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 173615 - 173666
Alignment:
Q  102 tatagacttgaatcaatgctatgattcattaagcacctttttgccaaaggtt 153  Q
    |||| ||||||||||||| || | ||||||||||||| ||||||||||||||    
T  173615 tatacacttgaatcaatgttaaggttcattaagcacccttttgccaaaggtt 173666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 14610546 - 14610618
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  14610546 gacttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 14610618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 12857007 - 12857078
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  12857007 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 12857078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 26051239 - 26051310
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  26051239 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 26051310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 26056352 - 26056423
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  26056352 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 26056423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 26060598 - 26060669
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  26060598 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 26060669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 26065711 - 26065782
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  26065711 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 26065782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 12851894 - 12851965
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  12851894 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 12851965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 37459831 - 37459784
Alignment:
Q  184 gttcattaaacacctatttgccaaaggttccaatgtatatgaaagatt 231  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||    
T  37459831 gttcattaaacactcatttgccaaaggttacaatgtatatgaatgatt 37459784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 5440287 - 5440217
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaa 176  Q
    |||||||||||||| |||| |||||||| ||||  ||| ||||| ||||| | ||||||||||| ||||||    
T  5440287 gacttgaatcaatgttatggttcattaatcacccctttcccaaaagttatgaccatatacacttaaatcaa 5440217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 5449297 - 5449227
Alignment:
Q  106 gacttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaa 176  Q
    |||||||||||||| |||| |||||||| ||||  ||| ||||| ||||| | ||||||||||| ||||||    
T  5449297 gacttgaatcaatgttatggttcattaatcacccctttcccaaaagttatgaccatatacacttaaatcaa 5449227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 35352287 - 35352190
Alignment:
Q  126 ttcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaaacacctatttgccaaaggttccaatgtatat 223  Q
    |||||||||||||  |||  |||||||||| || |||||||||||||||||||  |   ||||||||| | | ||||| ||||| ||||||| |||||    
T  35352287 ttcattaagcacccatttatcaaaggttatgattatatacacttgaatcaatgttatgattcattaaatatccatttgtcaaagattccaatatatat 35352190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 2005 - 1934
Alignment:
Q  107 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatg 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  2005 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaatg 1934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University