View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_28 (Length: 248)
Name: NF6409_low_28
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 16510473 - 16510555
Alignment:
| Q |
1 |
tattgttatcttaaattaaattaaaagatagattgtatagttttacaaatttttgtctacctttatcgtcaaataacttaagc |
83 |
Q |
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| T |
16510473 |
tattgttatcttaaattaaattaaaagatagattgtataattttacaaatttttgtctacctttatcgtcaaataacttaagc |
16510555 |
T |
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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 16510624 - 16510715
Alignment:
| Q |
153 |
cgcaaagtaaaaaacaaacaatcttattacaaagaat---ttcttcttcttcttctcggaattctagaagactcctaacattcgcttctctg |
241 |
Q |
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| T |
16510624 |
cgcaaagtaaaaaacaaacaatcttattacaaagaatttcttcttcttcttcttctcggaattctagaagactcctaacattcgcttctctg |
16510715 |
T |
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