View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_30 (Length: 242)
Name: NF6409_low_30
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30242502 - 30242268
Alignment:
| Q |
1 |
tgcatttattagggttagaggtttggagatggtgtttaatggcaatggtaacatttagtggccgtttgttttcaagttggttagttagtttcaccgtttt |
100 |
Q |
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| T |
30242502 |
tgcatttattagggttagaggtttggagatggtgtttaatggcaatggtaacatttagtggccgtttgttttcaagttggttagttagtttcaccgtttt |
30242403 |
T |
|
| Q |
101 |
ctttatcgaaagaaacttcatgctaagagaaaaagttttatatttcatctatggtttaaggaacagcattcgtaattgtttatggttaggtcttgtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30242402 |
ctttatcgaaagaaacttcatgctaagagaaaaagttttatatttcatctatggtttaaggaacagcattcgtaattgtttatggttaggtcttgtttta |
30242303 |
T |
|
| Q |
201 |
ctctcatattggagtgtcgttttcgatgatgtcca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30242302 |
ctctcatattggagtgtcgttttcgatgatgtcca |
30242268 |
T |
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