View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_33 (Length: 240)
Name: NF6409_low_33
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10729635 - 10729414
Alignment:
| Q |
1 |
caagaaattaatacttaaaagatgaataggtctcattgtgcaacagtaggaccacctcaatccaaacactcatccacttcttaagagataatttgtgtcc |
100 |
Q |
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| T |
10729635 |
caagaaattaatacttaaa-gatgaataggtctcattgtgcaatagtaggaccacctcaatccaaacactcatccacttcttaagagataatttgtgtcc |
10729537 |
T |
|
| Q |
101 |
ctaaatcaaatttcttaagatgttgcgttgccatttcaaaatcaaattaaatccctaagtacatctagggttttgttaatttgtgtcttaagaacacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10729536 |
ctaaatcaaatttcttaagatgttgcgttgccatttcaaaatcaaattaaatccctaagtacatctagggttttgttaatttgtgtcttaagaacacata |
10729437 |
T |
|
| Q |
201 |
ctccatttattcacactcattgt |
223 |
Q |
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| ||||||||||||||||||||| |
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| T |
10729436 |
ccccatttattcacactcattgt |
10729414 |
T |
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