View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_34 (Length: 240)
Name: NF6409_low_34
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_34 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 3429672 - 3429478
Alignment:
| Q |
39 |
ataagttaataatcttcctctgcatggatgttggccattataaatacctacatccccatgtcttctttcaaagctcacatccttcaccctctttcctttc |
138 |
Q |
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| T |
3429672 |
ataagttaataatcttcctctgcatggatgttggccattataaatacctacatccccatgtctt-------agctcacatacttcaccctctttcctttc |
3429580 |
T |
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| Q |
139 |
ccttctactacacctaaatcttcctcttcctaacaaaatagtttcttttttctttctaaaacaaattgtacaaaaacaaagaagacaaaatgaggactat |
238 |
Q |
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| T |
3429579 |
ccttctactacacctaaatcttcctcttcctaacaaaatagtttcttttttctttctaaaacaaattgtacaaaaacaaagaagacaaaatgaggactat |
3429480 |
T |
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Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 3426193 - 3425999
Alignment:
| Q |
48 |
taatcttcctctgcatggatgttggccattataaatacctacatccccatgtcttctttca-aagctcacatccttcaccctctttcctttcccttctac |
146 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
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| T |
3426193 |
taatcttcttcttcatggatgttggccattataaatacctacctccccatgtcttctttcccaagcttacacccttcaccctctttcctttcccttctac |
3426094 |
T |
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| Q |
147 |
tacacctaaatcttcctcttcctaacaaaatagtttcttttttctttctaaaacaaattgtacaaaaac----aaagaagacaaaatgaggactatac |
240 |
Q |
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||||||||||||| ||||||||||| |||| || ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
3426093 |
tacacctaaatctctctcttcctaactaaatcgt---tttttccttcctaaaatcaatagtacaaaaacaaagaaagaagacaaaatgaggagtatac |
3425999 |
T |
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