View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6409_low_38 (Length: 232)
Name: NF6409_low_38
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 8718335 - 8718532
Alignment:
| Q |
17 |
aagaaaggaaacaacaacaaacaagaggagggtgcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgtt |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8718335 |
aagaatggaaacaacaacaaacaagaggagggggcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcccgtt |
8718434 |
T |
|
| Q |
117 |
atttagctggcatttgtggattggtactggcctaatccaagtatgcatttcgaagaataagtgttggctgttgttgtggaatttgtgttggcatttttat |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8718435 |
atttagctggcatttgtggattgg---tggcctaatccaagtctgcatttcgacgaataagtgttggctgttgttgtggaatttgtgttggcatttttat |
8718531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 8672078 - 8672220
Alignment:
| Q |
72 |
atggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagctggcatttgtggattggtactggcctaatccaagtatgcatttcgaag |
171 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||| |||||||||| | |
|
|
| T |
8672078 |
atgggaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagcctgcatttaaggattggt---ggcctaatcctagtctgcatttcgacg |
8672174 |
T |
|
| Q |
172 |
aataagtgttggctgttgttgtggaatttgtgttggcatttttatt |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8672175 |
aataagtgttagctgttgttgtggaatttgtgttggcatttttatt |
8672220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University