View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6409_low_39 (Length: 225)

Name: NF6409_low_39
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6409_low_39
NF6409_low_39
[»] chr6 (12 HSPs)
chr6 (1-210)||(26800690-26800899)
chr6 (1-208)||(22424682-22424891)
chr6 (102-210)||(17758228-17758336)
chr6 (1-209)||(17763093-17763302)
chr6 (102-210)||(3808560-3808668)
chr6 (1-186)||(21589034-21589218)
chr6 (1-208)||(26829979-26830188)
chr6 (16-209)||(5043745-5043939)
chr6 (102-210)||(2972792-2972901)
chr6 (67-174)||(9572761-9572868)
chr6 (1-90)||(21593767-21593855)
chr6 (102-148)||(603003-603049)
[»] chr7 (13 HSPs)
chr7 (1-184)||(8359198-8359381)
chr7 (1-209)||(3259098-3259305)
chr7 (67-201)||(29608905-29609040)
chr7 (102-209)||(2390489-2390596)
chr7 (1-209)||(34310571-34310781)
chr7 (53-209)||(4508563-4508720)
chr7 (67-210)||(4510404-4510548)
chr7 (67-210)||(4512246-4512390)
chr7 (1-171)||(22328285-22328455)
chr7 (1-186)||(32357935-32358119)
chr7 (102-184)||(2360859-2360941)
chr7 (102-186)||(6359830-6359915)
chr7 (1-146)||(48599255-48599399)
[»] chr4 (22 HSPs)
chr4 (1-210)||(379483-379692)
chr4 (1-210)||(41964519-41964725)
chr4 (1-210)||(2209817-2210030)
chr4 (1-186)||(12073495-12073680)
chr4 (1-209)||(50673705-50673912)
chr4 (67-210)||(40632613-40632757)
chr4 (1-184)||(33989948-33990131)
chr4 (69-183)||(55085325-55085439)
chr4 (1-134)||(46703604-46703737)
chr4 (102-209)||(46703752-46703860)
chr4 (1-210)||(41639529-41639736)
chr4 (1-148)||(6656059-6656205)
chr4 (1-186)||(35662544-35662728)
chr4 (1-142)||(8665511-8665651)
chr4 (30-173)||(26699335-26699478)
chr4 (16-142)||(8648257-8648382)
chr4 (102-169)||(12119748-12119815)
chr4 (71-148)||(27416884-27416961)
chr4 (114-184)||(6719771-6719842)
chr4 (123-186)||(21688470-21688533)
chr4 (102-177)||(32091645-32091719)
chr4 (67-145)||(26364405-26364483)
[»] chr1 (17 HSPs)
chr1 (1-209)||(28242407-28242616)
chr1 (1-198)||(47115275-47115472)
chr1 (102-210)||(37032925-37033033)
chr1 (16-209)||(29136365-29136558)
chr1 (53-210)||(37876622-37876780)
chr1 (1-186)||(47255217-47255405)
chr1 (1-209)||(37168401-37168606)
chr1 (1-186)||(13548880-13549065)
chr1 (1-204)||(11348801-11349006)
chr1 (1-186)||(31925587-31925772)
chr1 (1-134)||(13547022-13547154)
chr1 (73-209)||(34603737-34603874)
chr1 (16-196)||(7482100-7482280)
chr1 (102-148)||(19752886-19752932)
chr1 (102-186)||(42297852-42297936)
chr1 (102-175)||(6808657-6808730)
chr1 (102-142)||(19754697-19754737)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-211)||(17858-18069)
[»] chr8 (11 HSPs)
chr8 (1-209)||(40328883-40329086)
chr8 (102-205)||(11384188-11384291)
chr8 (67-210)||(3772360-3772503)
chr8 (1-186)||(4283627-4283811)
chr8 (1-209)||(18655503-18655713)
chr8 (17-186)||(42434870-42435040)
chr8 (67-146)||(2999723-2999802)
chr8 (115-185)||(10240341-10240411)
chr8 (71-148)||(40221917-40221994)
chr8 (102-148)||(10930116-10930162)
chr8 (102-191)||(11137230-11137320)
[»] chr3 (14 HSPs)
chr3 (1-210)||(49199321-49199534)
chr3 (23-210)||(43401653-43401844)
chr3 (1-210)||(46860577-46860786)
chr3 (102-210)||(43403596-43403704)
chr3 (43-209)||(36018993-36019159)
chr3 (1-209)||(55301827-55302037)
chr3 (1-210)||(6095456-6095664)
chr3 (17-210)||(41819381-41819572)
chr3 (1-209)||(54593807-54594017)
chr3 (67-186)||(30236294-30236413)
chr3 (102-148)||(40913500-40913546)
chr3 (102-186)||(31340102-31340186)
chr3 (102-184)||(47304461-47304543)
chr3 (106-186)||(5270580-5270661)
[»] chr2 (6 HSPs)
chr2 (67-210)||(42287967-42288110)
chr2 (71-209)||(17450749-17450884)
chr2 (102-209)||(7451322-7451429)
chr2 (1-210)||(45727032-45727239)
chr2 (16-180)||(33648290-33648454)
chr2 (1-164)||(35446788-35446949)
[»] chr5 (8 HSPs)
chr5 (1-184)||(27637495-27637678)
chr5 (1-211)||(213568-213781)
chr5 (117-209)||(40751195-40751284)
chr5 (1-148)||(40147364-40147510)
chr5 (117-209)||(40763200-40763289)
chr5 (102-191)||(16640814-16640903)
chr5 (1-186)||(5058148-5058334)
chr5 (1-90)||(4160702-4160791)
[»] scaffold0236 (1 HSPs)
scaffold0236 (16-209)||(10607-10800)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-186)||(7430-7616)
[»] scaffold0197 (1 HSPs)
scaffold0197 (102-171)||(1291-1360)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26800690 - 26800899
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| ||| ||||||| || || ||||||||||||||||||||||||||||          
T  26800690 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactggatgaacatttcttggtgttgttatcttttctctactctttt 26800789  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26800790 tatcttgtttatcttttggttagattgtggttttgctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 26800889  T
Q  201 tattggttgc 210  Q
    ||||||||||    
T  26800890 tattggttgc 26800899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22424891 - 22424682
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||| ||| ||||||||||||| ||| | ||||| || || ||||||||||||||||||||||||||||          
T  22424891 atagtggattggagagatcaatctctccttcagagtaggtcattgttggaccgtactgggtgaacatttcttggtgttgttatcttttctctactctctt 22424792  T
Q  101 natcttgtttatcctttggttagattgtggtttttct--atgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttg 198  Q
     ||||||||||||||| |||||||||||||||||| |  ||||||||| |||||| | |||||||||||||||||| ||| ||||||| |||||||||||    
T  22424791 tatcttgtttatccttaggttagattgtggtttttttcaatgcacttggtttctatattagatctagattgttgttgttgtttgtggttatttacatttg 22424692  T
Q  199 gttattggtt 208  Q
    ||||||||||    
T  22424691 gttattggtt 22424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 17758228 - 17758336
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  17758228 atcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgcggttatttacatttggtt 17758327  T
Q  202 attggttgc 210  Q
    |||||||||    
T  17758328 attggttgc 17758336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 17763093 - 17763302
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctct-acnnnnn 99  Q
    |||||||||| ||  |||||| ||||||||||| |||| |||   || ||| ||||| | || || |||||||||||||||||||||||| | ||         
T  17763093 atagtggattggagtgatcaatctctcctccagagtagatcaagtttggaccgaactaggtgaacatttcttggtgttgttatcttttcttttactctct 17763192  T
Q  100 nnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttgg 199  Q
      |||||||| |||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||| | ||||||||||||    
T  17763193 ttatcttgttcatcctttggttagattgtagttttgctatgcacttgttatctagattagatctagattgttgttattgtttgtgattatttacatttgg 17763292  T
Q  200 ttattggttg 209  Q
    ||||||||||    
T  17763293 ttattggttg 17763302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 3808668 - 3808560
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||||||| |||||||| |||| ||||||||||| ||    
T  3808668 atcttgtttatcctttggttagattatggttttgctatgcatttgttttctagattagatctagattgttgctattgcttttggttatttacatttgatt 3808569  T
Q  202 attggttgc 210  Q
    |||||||||    
T  3808568 attggttgc 3808560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21589034 - 21589218
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  21589034 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactttcct 21589132  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     ||||||||||| | || ||| |||||||||||| ||||||||||| ||| |||||||| |||| |||||||||||||||||||||    
T  21589133 tatcttgtttattccttagttggattgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggt 21589218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 26830188 - 26829979
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||  ||||||||  ||| ||||||||||| || || |||||||||||||||||||||||| |||          
T  26830188 atagtggattggagagatcaatctctcctccaaagtaggtcaa-gtttgactgaactgggtgaacatttcttggtgttgttatcttttctttactctctc 26830090  T
Q  101 n--atcttgtttatcctttggttag-attgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacattt 197  Q
       ||||||||||| | ||| || | ||||||||||| ||||||||||| ||| |||||||| | || ||||||||||||||||||||| ||||||||||    
T  26830089 tttatcttgtttattccttgctttggattgtggttttgctatgcacttggtttatagactaggtttatattgttgttattgcttgtggttatttacattt 26829990  T
Q  198 ggttattggtt 208  Q
    |||||||||||    
T  26829989 ggttattggtt 26829979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 5043745 - 5043939
Alignment:
Q  16 gatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcct 115  Q
    |||||| ||||||||||  ||||||||||||| ||| ||||||| || || |||||||||||||||||||||||| |||       |||||||||||       
T  5043745 gatcaatctctcctccatagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatttc 5043844  T
Q  116 ttggttagattgtggtttttctatgcacttgttttctagactagatc--tagattgttgttattgcttgtggtaatttacatttggttattggttg 209  Q
    |||||| |||||||||||| |||||||||||  || |||| ||| ||  || ||||||||| ||||||| ||| ||||||||||||||||||||||    
T  5043845 ttggttggattgtggttttgctatgcacttg-attatagaataggtctatatattgttgttgttgcttgaggttatttacatttggttattggttg 5043939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 2972901 - 2972792
Alignment:
Q  102 atcttgtttatcctttggttagattgtggttttt-ctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||  ||| |||||||| |||| ||||||||| ||| ||||||| ||||||||||| |    
T  2972901 atcttgtttatcatttggttagattgtggttttttctatgcacttagtttatagactaggtctatattgttgttgttgtttgtggttatttacatttgat 2972802  T
Q  201 tattggttgc 210  Q
    ||||||||||    
T  2972801 tattggttgc 2972792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 9572761 - 9572868
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    ||||||| ||||||||||||||||||         ||||| | ||| ||||| || ||||||||| |||||||||||||| |||||||| ||||||||||    
T  9572761 tttcttgatgttgttatcttttctctcgtgtctttatcttatctattctttgattcgattgtggtatttctatgcacttggtttctagattagatctaga 9572860  T
Q  167 ttgttgtt 174  Q
    || |||||    
T  9572861 ttattgtt 9572868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 21593767 - 21593855
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttct 90  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || ||||||||||||||||||||||||    
T  21593767 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttct 21593855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 603049 - 603003
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||    
T  603049 atcttgtttatgccttggttggattgtggttttactatgcacttgtt 603003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 8359381 - 8359198
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| ||| ||||||| || || ||||||||||||||||||||||||||||          
T  8359381 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctctactctcat 8359282  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtg 184  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  8359281 tatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttgttgttgcttgtg 8359198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3259098 - 3259305
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  |||  || ||||||| || || |||| ||||||||||||||||||| |||          
T  3259098 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttgaaccgaactgggtgaacatttcctggtgttgttatcttttctttactctctt 3259196  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     ||||||||||| | |||||| |||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  3259197 tatcttgtttattccttggttggattgtggttttgctatgcccgtgttttctagattagatctagattgttgttattgcttgtggttatttacatttggt 3259296  T
Q  201 tattggttg 209  Q
    |||||||||    
T  3259297 tattggttg 3259305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 29608905 - 29609040
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttc-tatgcacttgttttctagactagatctag 165  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||  |||||||||| |||||| | |||||||||    
T  29608905 tttcttggtgttgttatcttttctctactctctttatcttgtttatcctttgcttagattgtggtttttgatatgcacttggtttctatattagatctag 29609004  T
Q  166 attgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||| ||||||||||| ||||||||||||||    
T  29609005 attgttgttgttgcttgtggttatttacatttggtt 29609040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 2390489 - 2390596
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    |||||||||||||||| ||| |||||||||||| |||| || |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  2390489 atcttgtttatccttttgttggattgtggttttgctatacatttgttttctagattagatctagattgttgttattgattgtggttatttacatttggtt 2390588  T
Q  202 attggttg 209  Q
    ||||||||    
T  2390589 attggttg 2390596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 34310781 - 34310571
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||   || ||| ||||||| || ||  |  |||||||||||||||||||| |||          
T  34310781 atagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggtgaacaatctttggtgttgttatcttttctttactctctt 34310682  T
Q  101 natcttgtttat-cctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt-aatttacatttg 198  Q
     ||||||||||| |||||||||  ||||||||||| ||||||||||| ||| |||||||| |||| |||||||||||||||||||||  |||||||||||    
T  34310681 tatcttgtttattcctttggttgaattgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggtctatttacatttg 34310582  T
Q  199 gttattggttg 209  Q
    |||||||||||    
T  34310581 gttattggttg 34310571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 4508720 - 4508563
Alignment:
Q  53 gaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttct 152  Q
    ||||||| || || ||||||||||||||||| |||||| |||       ||||||||||||||||||||  ||||||||||| ||||||||||| ||| |    
T  4508720 gaactgggtgaacatttcttggtgttgttatattttctttactctctttatcttgtttatcctttggttgaattgtggttttgctatgcacttggtttat 4508621  T
Q  153 agactagatctagattgttgttattgcttgtgg-taatttacatttggttattggttg 209  Q
    ||||||| |||| |||||||||||||||||||| | ||||| ||||||||||||||||    
T  4508620 agactaggtctatattgttgttattgcttgtggtttatttatatttggttattggttg 4508563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 4510548 - 4510404
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    |||||||||||||||||||||||| |||       ||||||||||||| || |||  |||||| |||| ||||||||||| ||| |||||||| |||| |    
T  4510548 tttcttggtgttgttatcttttctttactctcttgatcttgtttatccattagttgaattgtgtttttgctatgcacttgatttatagactaggtctata 4510449  T
Q  167 ttgttgttattgcttgtgg-taatttacatttggttattggttgc 210  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  4510448 ttgttgttattgcttgtggtttatttacatttggttattggttgc 4510404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 4512390 - 4512246
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    |||||||||||||||||||||||| |||       ||||||||||||| || |||  |||||| |||| ||||||||||| ||| |||||||| |||| |    
T  4512390 tttcttggtgttgttatcttttctttactctcttgatcttgtttatccattagttgaattgtgtttttgctatgcacttgatttatagactaggtctata 4512291  T
Q  167 ttgttgttattgcttgtgg-taatttacatttggttattggttgc 210  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  4512290 ttgttgttattgcttgtggtttatttacatttggttattggttgc 4512246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 22328455 - 22328285
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| |||||| | || ||||||||||||| ||| ||||||| |  |  ||| ||||||||||||||||||||||||          
T  22328455 atagtggatttgagagatcaatctctcccctagagtaggtcattgttggaccgaactgggtaaatattttttggtgttgttatcttttctctactctctt 22328356  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgtt 171  Q
     ||||||||||| |||| ||| ||||||||||||  |||||||||| ||||| || |||||||||||||||    
T  22328355 tatcttgtttattcttttgttcgattgtggttttgttatgcacttggtttctcgattagatctagattgtt 22328285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 32358119 - 32357935
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  32358119 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 32358021  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     | ||||||||| | ||| ||  |||||||||||  |||||| |||  || || ||||| |||| ||| ||||| |||||||||||    
T  32358020 taacttgtttattccttgcttgaattgtggttttgttatgcaattggattataaactaggtctatattattgttgttgcttgtggt 32357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 2360941 - 2360859
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtg 184  Q
    ||||||||||| | ||||||  |||||||||||  |||||||||| |||||||||||| |||| |||| |||| |||||||||    
T  2360941 atcttgtttattccttggttgaattgtggttttgatatgcacttggtttctagactaggtctatattgatgttgttgcttgtg 2360859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 6359915 - 6359830
Alignment:
Q  102 atcttgtttat-cctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
    ||||||||||| ||||  ||| |||||||||||| ||||||||||| ||| |||||||| | || ||| ||||| |||||||||||    
T  6359915 atcttgtttattccttaagttggattgtggttttgctatgcacttggtttatagactaggtatatattattgttgttgcttgtggt 6359830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 48599399 - 48599255
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| | || |||  ||| ||| ||||||| || || ||||||| |||||||||||||||| |||          
T  48599399 atagtggattggagagatcaatctctcctccagagcagatcaa-gttggaccgaactgggtgaacatttcttgatgttgttatcttttctttactctctt 48599301  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttg 146  Q
     ||||||||||| | |||||| |||||| ||||| || ||||||||    
T  48599300 tatcttgtttattccttggttggattgtagttttgctgtgcacttg 48599255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 379483 - 379692
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  379483 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactggatgaacatttcttggtgttgttatcttttctttactctctt 379582  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     |||||||||||||||||||||||||||||||||  |||||||||| ||| |||||||| |||| ||||||||| ||| ||||||| ||||||||||| |    
T  379583 tatcttgtttatcctttggttagattgtggttttgttatgcacttggtttatagactaggtctatattgttgttgttgtttgtggttatttacatttgat 379682  T
Q  201 tattggttgc 210  Q
    ||||||||||    
T  379683 tattggttgc 379692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41964519 - 41964725
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| ||  | |||||||||||||||||||||||| |||          
T  41964519 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgagcatttcttggtgttgttatcttttctttactctct- 41964616  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |    
T  41964617 -atcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttgat 41964715  T
Q  201 tattggttgc 210  Q
    | ||||||||    
T  41964716 tgttggttgc 41964725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2209817 - 2210030
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttt-tcttggtgttgttatct---tttctctacnn 96  Q
    |||||||||| ||  ||| || ||||||||||| ||||||||| ||| ||| ||||||| || ||  | ||||||||||||| |||   |||||||||      
T  2209817 atagtggattggagagattaatctctcctccagagtaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactc 2209916  T
Q  97 nnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatt 196  Q
         |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  2209917 tctttatcttgtttatcatttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgtttgtggttatttacatt 2210016  T
Q  197 tggttattggttgc 210  Q
    ||||||||||||||    
T  2210017 tggttattggttgc 2210030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 12073495 - 12073680
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||| ||||| ||||||||||||| ||| ||||| | || || |||||||||||||||||||||||| |||          
T  12073495 atagtggattggagagatcaatctctcttccagagtaggtcattgttggaccgaactaggtgaacatttcttggtgttgttatcttttctttactctctt 12073594  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     ||||||||||| |||||||||||||||||||||  |||||||||| |||||||| |||||||||||||||||| |||||||||||    
T  12073595 tatcttgtttattctttggttagattgtggttttgttatgcacttggtttctagattagatctagattgttgttgttgcttgtggt 12073680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 50673912 - 50673705
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||| | || || |||||||||||||||||||||||| |||          
T  50673912 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactaggtgaacatttcttggtgttgttatcttttctttactctctt 50673814  T
Q  101 natcttgttta-tcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttgg 199  Q
     |||||||||| |||||   || |||||||||||| |||||||||||  || ||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  50673813 tatcttgtttattccttgctttggattgtggttttgctatgcacttg-attatagactagatctatattgttgttattgcttatggtgatttacatttgg 50673715  T
Q  200 ttattggttg 209  Q
    ||||||||||    
T  50673714 ttattggttg 50673705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 40632613 - 40632757
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    |||||||||||||||||||||| | |||       ||||||||||||||||||||  ||||||||||| | ||||||||| | | |||||||| |||| |    
T  40632613 tttcttggtgttgttatcttttttttactctctttatcttgtttatcctttggttgaattgtggttttgccatgcacttggtatatagactaggtctata 40632712  T
Q  167 ttgttgttattgcttgtgg-taatttacatttggttattggttgc 210  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  40632713 ttgttgttattgcttgtggtttatttacatttggttattggttgc 40632757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33989948 - 33990131
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| |||||| |||| |||||||||| || || |||||||| |  || |||||||||||| |||| |||| |||||          
T  33989948 atagtggattggagagatcaatctctccaccagagtaggtcattcttggattgaactgggtaaacatttcttggtgttattatattttttctactctctt 33990047  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtg 184  Q
     ||||||||||| ||||||||  ||| ||| ||| ||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  33990048 tatcttgtttattctttggttcaattctggatttgctatgcacttggtttctagattagatctagattgttgttgttgcttgtg 33990131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 55085439 - 55085325
Alignment:
Q  69 tcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagatt 168  Q
    |||||||||||||||||||||| |||       ||||||||||| | |||||| |||||||||||| ||||||||||| |||||| | ||||||||||||    
T  55085439 tcttggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttggtttctaaattagatctagatt 55085340  T
Q  169 gttgttattgcttgt 183  Q
    |||||||||||||||    
T  55085339 gttgttattgcttgt 55085325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 46703604 - 46703737
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| ||| ||| ||| || || |||||||||||||||||||||||| |||          
T  46703604 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaattgggtgaacatttcttggtgttgttatcttttctttactctctt 46703703  T
Q  101 natcttgtttatcctttggttagattgtggtttt 134  Q
     |||||||||||| ||||||||||||||||||||    
T  46703704 tatcttgtttatcatttggttagattgtggtttt 46703737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 46703752 - 46703860
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatc--tagattgttgttattgcttgtggtaatttacatttgg 199  Q
    ||||||||||||||||||||||||||||||||| |||||||||||  || |||| ||| ||  || ||||||||| ||||||| ||| ||||||||||||    
T  46703752 atcttgtttatcctttggttagattgtggttttgctatgcacttg-attatagaataggtctatatattgttgttgttgcttgaggttatttacatttgg 46703850  T
Q  200 ttattggttg 209  Q
    ||||||||||    
T  46703851 ttattggttg 46703860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41639529 - 41639736
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||  || || |||||||||||||||||| ||||| |||          
T  41639529 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgagtgaacatttcttggtgttgttatcgtttctttactctctt 41639627  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagat---tgttgttattgcttgtggtaatttacattt 197  Q
     ||||||||||||||||||||  ||||||||||| |||||||||||  || |||||||| |||| ||     ||||| ||||||||||   |||||||||    
T  41639628 tatcttgtttatcctttggttgaattgtggttttgctatgcacttg-attatagactaggtctatatatcatttgttgttgcttgtgg---tttacattt 41639723  T
Q  198 ggttattggttgc 210  Q
    |||||||||||||    
T  41639724 ggttattggttgc 41639736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6656059 - 6656205
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||| ||||| ||||||||  ||| ||| ||| ||| || || |||||||||||||||||||||||| |||          
T  6656059 atagtggattggagagatcaatctctcatccagagtaggtcaa-gttggaccgaattgggtgaacatttcttggtgttgttatcttttctttactctctt 6656157  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
     |||||||||||||||| ||| |||||||||||| |||||||||||||    
T  6656158 tatcttgtttatccttttgttggattgtggttttgctatgcacttgtt 6656205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 35662544 - 35662728
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  ||||||  ||||||| || ||||||||  ||| ||| ||||||  || || ||| |||||||||||||||||||| |||          
T  35662544 atagtggattggagagatcaatatctcctcaagagtaggtcaa-gttggaccgaactgaatgaacattttttggtgttgttatcttttctttactctctt 35662642  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     ||||||||||| | |||||| |||||||||||| ||||||||||| ||| |||||||  |||| ||||||||| |||||| ||||    
T  35662643 tatcttgtttattccttggttggattgtggttttgctatgcacttggtttatagactatgtctatattgttgttgttgcttatggt 35662728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8665511 - 8665651
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| |||  |||| | ||||| |||||||||||||||||||||||| |||          
T  8665511 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccaaactaggtgtacatttcttggtgttgttatcttttctttactctctt 8665609  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgca 142  Q
     ||||||||||| | |||||| |||||||||||| |||||||    
T  8665610 tatcttgtttattccttggttggattgtggttttgctatgca 8665651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 26699478 - 26699335
Alignment:
Q  30 ccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtg 129  Q
    |||| ||||||||||||| ||| ||||||| |  |  |||||| |||  |||||||||||| |||       ||||||||||| ||||||||  ||| ||    
T  26699478 ccagagtaggtcattgttggaccgaactgggtaaaaatttcttagtgccgttatcttttctttactctctttatcttgtttattctttggttcaattatg 26699379  T
Q  130 gtttttctatgcacttgttttctagactagatctagattgttgt 173  Q
    ||||| |||||||||||  ||||||| |||||||||||||||||    
T  26699378 gttttgctatgcacttggattctagattagatctagattgttgt 26699335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 8648257 - 8648382
Alignment:
Q  16 gatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcct 115  Q
    |||||| ||||||||||| ||||||||  ||| |||  |||||| || || |||||||||||||||||||||||| |||       ||||||||||| |     
T  8648257 gatcaatctctcctccagagtaggtcaa-gttggaccaaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattcc 8648355  T
Q  116 ttggttagattgtggtttttctatgca 142  Q
    |||||| |||||||||||| |||||||    
T  8648356 ttggttggattgtggttttgctatgca 8648382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 12119748 - 12119815
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattg 169  Q
    ||||||||||  |||||||  |||||||||||| ||||||||||  |||||||| |||||||||||||    
T  12119748 atcttgtttagtctttggtccgattgtggttttgctatgcacttagtttctagattagatctagattg 12119815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 27416961 - 27416884
Alignment:
Q  71 ttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
    |||||||||||||||| ||| |||       ||||||||||| |||||||| |||||||||||| | |||||||||||    
T  27416961 ttggtgttgttatcttgtctttactctctttatcttgtttattctttggttggattgtggttttgccatgcacttgtt 27416884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 6719771 - 6719842
Alignment:
Q  114 ctttggttagattgtggtttttctatgcacttgttttctagactagatctagat-tgttgttattgcttgtg 184  Q
    ||||||||  ||||||||||| || |||||||| |||||||| ||||||||||| ||||||| |||| ||||    
T  6719771 ctttggttttattgtggttttgctttgcacttggtttctagattagatctagatctgttgtttttgcctgtg 6719842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 21688470 - 21688533
Alignment:
Q  123 gattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
    ||||||||||||  |||||| ||| ||| ||||||||||||| ||| ||||| |||||||||||    
T  21688470 gattgtggttttgttatgcatttgatttatagactagatctatattattgttgttgcttgtggt 21688533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 32091645 - 32091719
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttatt 177  Q
    ||||||||||| |||| |||  ||||||||||| || | ||||||||| ||||| |||||||| ||||||||||||    
T  32091645 atcttgtttattctttagttcaattgtggtttt-ctttacacttgtttgctagattagatctaaattgttgttatt 32091719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 26364405 - 26364483
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcactt 145  Q
    |||||||||||||||||||||||| |||       ||||||||||| | ||| || |||||||||||| |||| |||||    
T  26364405 tttcttggtgttgttatcttttctttactctctttatcttgtttattccttgcttggattgtggttttgctatacactt 26364483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 28242407 - 28242616
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| ||| ||||||| || || ||||||||||||||||||||||||||||          
T  28242407 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctctactctctt 28242506  T
Q  101 natcttgtttatcctttggttagattgtggttttt-ctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttgg 199  Q
     |||||||||||| ||| ||||||||||||||||| |||| |||||| |||||| | |||||||||||||||||| ||||||| ||| ||||||||||||    
T  28242507 tatcttgtttatcattttgttagattgtggtttttgctattcacttggtttctaaattagatctagattgttgttgttgcttgaggttatttacatttgg 28242606  T
Q  200 ttattggttg 209  Q
    ||||||||||    
T  28242607 ttattggttg 28242616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 47115275 - 47115472
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| |||| |||||| ||||||||||||| ||| ||||||| || || ||||||| |||||||||||||||||| |          
T  47115275 atagtggattggagagatcaatctctgctccagagtaggtcattgttggaccgaactgggtgaacatttcttgatgttgttatcttttctctgctctttt 47115374  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttg 198  Q
     |||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  47115375 tatcttgtttatccttttgttagattgtggttttgttatgcacttgttttctagattagatctagattgttgttattgcttgtgattatttacatttg 47115472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 37033033 - 37032925
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  37033033 atcttgtttatcctttggttagagtgtgattttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggtt 37032934  T
Q  202 attggttgc 210  Q
    |||||||||    
T  37032933 attggttgc 37032925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 29136365 - 29136558
Alignment:
Q  16 gatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgt-tatcttttctctacnnnnnnnatcttgtttatcc 114  Q
    |||||| ||||||||||| ||||||||   || ||| ||||| | || || |||||||||| ||| ||| ||||||||||       |||||||||||||    
T  29136365 gatcaatctctcctccagagtaggtcaagtttggaccgaactaggtgaacatttcttggtgctgtctat-ttttctctactctctttatcttgtttatcc 29136463  T
Q  115 tttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttg 209  Q
    |||||||||||||||||||| ||||||||||| ||| |||||||| ||||  |||||||||||||||||||| | ||| ||||||||||||||||    
T  29136464 tttggttagattgtggttttgctatgcacttggtttatagactaggtctattttgttgttattgcttgtggttagttatatttggttattggttg 29136558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 37876780 - 37876622
Alignment:
Q  53 gaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttct 152  Q
    ||||||| || || |||||||||||||||||||||||| |||       |||||||||||| |||||||  ||||||||||||||||||||||| ||| |    
T  37876780 gaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcatttggttgaattgtggtttttctatgcacttggtttat 37876681  T
Q  153 agactagatctagattgttgttattgcttgtgg-taatttacatttggttattggttgc 210  Q
    ||||||| |||| | ||||||| |||||||||| | |||||||||||||||||||||||    
T  37876680 agactaggtctatagtgttgtttttgcttgtggtttatttacatttggttattggttgc 37876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 47255405 - 47255217
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctct---acnnn 97  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| ||| ||||||| || || ||||||||||||||||| |||| |||   ||       
T  47255405 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttattttttttcttttactct 47255306  T
Q  98 nnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
        ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||| ||| ||||| |||||| ||||    
T  47255305 ctttatcttgtttatcctttggttagattgtggttttgctatgcacttggtttatagactaggtctatattattgttgttgcttatggt 47255217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 37168401 - 37168606
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  37168401 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 37168499  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     ||||||||||| | |||||| |||||||||||| |||||||||||  || |||||||| |||| | | ||||| ||||||| ||| |||||||||||||    
T  37168500 tatcttgtttattccttggtttgattgtggttttgctatgcacttg-attatagactaggtctata-tattgttgttgcttgaggttatttacatttggt 37168597  T
Q  201 tattggttg 209  Q
    |||||||||    
T  37168598 tattggttg 37168606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 13549065 - 13548880
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  13549065 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 13548967  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcac-ttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     ||||||||||| |||||||| |||||||||||| |||||||| ||| ||| |||||||| |||| ||| ||||| |||||||||||    
T  13548966 tatcttgtttattctttggttggattgtggttttgctatgcactttggtttatagactaggtctatattattgttgttgcttgtggt 13548880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11348801 - 11349006
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||  || || ||||||| |||||||||||||||| |||          
T  11348801 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgagtgaacatttcttgatgttgttatcttttctttactctctc 11348899  T
Q  101 n--atcttgtttatcctttggttag-attgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacattt 197  Q
       ||||||||||| | ||| || | ||||||||||| ||||||||||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||||    
T  11348900 tttatcttgtttattccttgctttggattgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggttatttacattt 11348999  T
Q  198 ggttatt 204  Q
    | |||||    
T  11349000 gattatt 11349006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31925772 - 31925587
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| |||||||| || ||||||||  ||| ||| ||||| | || || ||||||||||||||||| |||||| |||          
T  31925772 atagtggattggagagatcaatctctcctctagagtaggtcaa-gttggaccgaactaggtgaacatttcttggtgttgttattttttctttactctcgt 31925674  T
Q  101 natcttgt-ttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     ||||||| |||| |||||||| |||||||||||| ||||||||||| ||| |||||||| |||| ||| |||||||||||||||||    
T  31925673 tatcttgtattattctttggttggattgtggttttgctatgcacttggtttatagactaggtctatattattgttattgcttgtggt 31925587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 13547154 - 13547022
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  13547154 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 13547056  T
Q  101 natcttgtttatcctttggttagattgtggtttt 134  Q
     ||||||||||| |||||||| ||||||||||||    
T  13547055 tatcttgtttattctttggttggattgtggtttt 13547022  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 34603737 - 34603874
Alignment:
Q  73 ggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatc--tagattgt 170  Q
    |||||||||||||||||| |||       ||||||||||| | |||||| |||||||||||| |||||||||||  || |||||||| ||  || ||||     
T  34603737 ggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttg-attatagactaggtctatatattgc 34603835  T
Q  171 tgttattgcttgtggtaatttacatttggttattggttg 209  Q
    ||||  |||||| ||| ||||||||||| ||||||||||    
T  34603836 tgttggtgcttgaggttatttacatttgattattggttg 34603874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 7482280 - 7482100
Alignment:
Q  16 gatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcct 115  Q
    |||||| ||||||| ||| ||||||||  ||| ||| ||||| | || || |||| |||| |||| ||||||||| |||       ||||||||||| |     
T  7482280 gatcaatctctccttcagagtaggtcaa-gttggaccgaactaggtgaacatttcatggtattgtcatcttttctttactctctttatcttgtttattcc 7482182  T
Q  116 ttggttagattgtggtttttctatgcacttgttttctagactagatc--tagattgttgttattgcttgtggtaatttacatt 196  Q
    |||||| |||||||||||| |||||||||||  || |||||||| ||  || ||||||||| ||||||| ||| |||||||||    
T  7482181 ttggttggattgtggttttgctatgcacttg-attatagactaggtctatatattgttgttgttgcttgaggttatttacatt 7482100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 19752886 - 19752932
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||    
T  19752886 atcttgtttatccttttgttggattgtggttttactatgcacttgtt 19752932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 42297936 - 42297852
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
    |||||||||||  ||||||| ||||||| |||| ||||||||||| ||| |||||| | | || ||| |||||||||||| ||||    
T  42297936 atcttgtttattatttggttggattgtgattttgctatgcacttggtttatagacttggtatatattattgttattgcttatggt 42297852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 6808657 - 6808730
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgtta 175  Q
    ||||||||||| |||| ||| ||| ||| |||| || | |||||| ||||||||  ||||||||||||||||||    
T  6808657 atcttgtttatgctttagtttgatagtgattttgctttacacttggtttctagatcagatctagattgttgtta 6808730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 19754697 - 19754737
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgca 142  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  19754697 atcttgtttatccttttgttggattgtggttttgctatgca 19754737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 18069 - 17858
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||   || ||  ||||||| || || |||||||||||||||||||||||| |||          
T  18069 atagtggattggagagatcaatctctcctccagggtaggtcaagtttggatcgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 17970  T
Q  101 natcttgtttat-cctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttgg 199  Q
     ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||     
T  17969 tatcttgtttattcctttggttagattgtggttttgctatgcatttgttttctagattagatctagattgttgttattgcttgtggttatttacatttga 17870  T
Q  200 ttattggttgct 211  Q
    ||||||||||||    
T  17869 ttattggttgct 17858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 40328883 - 40329086
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||     || ||| ||||||  || || ||||||||||||||||||||||||||||          
T  40328883 atagtggattggagagatcaatctctcctccagagtaggt-----ttggacggaactgagtgaacatttcttggtgttgttatcttttctctactctcct 40328977  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||    
T  40328978 tttcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagactgttgttattgcttgtggttatttacatttggt 40329077  T
Q  201 tattggttg 209  Q
    | |||||||    
T  40329078 tgttggttg 40329086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 11384188 - 11384291
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  11384188 atcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggtt 11384287  T
Q  202 attg 205  Q
    ||||    
T  11384288 attg 11384291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 3772360 - 3772503
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    |||||||||| |||||||||||||||||       ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |||||||    
T  3772360 tttcttggtggtgttatcttttctctactctctttatcttgtttattctttggttagattgtggttttgctatgcacttgatttctagattaaatctaga 3772459  T
Q  167 ttgttgttattgcttgtggtaatttacatttggttattggttgc 210  Q
    |||||||| ||||||||||| |||| | |||||| |||||||||    
T  3772460 ttgttgttgttgcttgtggttattttcttttggtgattggttgc 3772503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 4283627 - 4283811
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||| |||| || ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  4283627 atagtggattggagagatcaatctcccctctagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 4283725  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
     ||||||||||||||||||||  ||||||||||| ||||||||||| ||| |||||||| |||| |||||||||||||||||||||    
T  4283726 tatcttgtttatcctttggttgaattgtggttttgctatgcacttggtttatagactaggtctatattgttgttattgcttgtggt 4283811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 18655503 - 18655713
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||||||  |||||| ||||||||||  ||||||||  ||| ||| ||||||| || || ||| |||||||||||||||||||| |||          
T  18655503 atagtggattagagagatcaatctctcctccaaagtaggtcaa-gttggaccgaactgggtgaacattttttggtgttgttatcttttctttactctctc 18655601  T
Q  101 n--atcttgtttatcctttggttag-attgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacattt 197  Q
       ||||||||||| | ||| || | ||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||| | ||||||||||    
T  18655602 tttatcttgtttattccttgctttggattgtggttttgctatgcacttggtttatagactagatctatattgttgttattgcttgtgtttatttacattt 18655701  T
Q  198 ggttattggttg 209  Q
    ||||||||||||    
T  18655702 ggttattggttg 18655713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 42435040 - 42434870
Alignment:
Q  17 atcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgttta-tcct 115  Q
    ||||| ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||       |||||||||| ||||    
T  42435040 atcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactttctttatcttgtttattcct 42434942  T
Q  116 ttggttagattgtggtttttctatgcacttgttttctagactagatcta--gattgttgttattgcttgtggt 186  Q
    |   || |||||||||||| |||||||||||  || |||||||| ||||   ||||||||| |||||||||||    
T  42434941 tgctttggattgtggttttgctatgcacttg-attatagactaggtctatctattgttgttgttgcttgtggt 42434870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 2999802 - 2999723
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttg 146  Q
    ||||||| ||||| ||||||||||||||       ||||||||||| |||||||||||||||| |||| |||||||||||    
T  2999802 tttcttgatgttgatatcttttctctactctctttatcttgtttattctttggttagattgtgattttgctatgcacttg 2999723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 10240341 - 10240411
Alignment:
Q  115 tttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtgg 185  Q
    ||||||| |||||||||||| || | || ||  |||||||| |||||||||||||||||||||| ||||||    
T  10240341 tttggttcgattgtggttttgctttacatttcgtttctagattagatctagattgttgttattgtttgtgg 10240411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 40221917 - 40221994
Alignment:
Q  71 ttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
    |||||||||||||||| ||| |||       |||||||| || |||||||| |||||||||||| |||||||||||||    
T  40221917 ttggtgttgttatcttgtctttactctctttatcttgttcattctttggttggattgtggttttgctatgcacttgtt 40221994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 10930162 - 10930116
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
    ||||||||||| |||| ||| |||||||||||| |||||||||||||    
T  10930162 atcttgtttattcttttgttggattgtggttttgctatgcacttgtt 10930116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 11137230 - 11137320
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagat-tgttgttattgcttgtggtaattt 191  Q
    ||||||||||| | |||||| ||||||||||||||| |  ||||| || ||||| ||||| ||||| |||| || ||||||||||| ||||    
T  11137230 atcttgtttattcattggttcgattgtggtttttctttatacttgattgctagattagatttagatatgttattgttgcttgtggttattt 11137320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 49199534 - 49199321
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttt-tcttggtgttgttatct---tttctctacnn 96  Q
    |||||||||| ||  ||| || |||||||||||  |||||||| ||| ||| ||||||| || ||  | ||||||||||||| |||   |||||||||      
T  49199534 atagtggattggagagattaatctctcctccagactaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactc 49199435  T
Q  97 nnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatt 196  Q
         ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  49199434 tctttatcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatt 49199335  T
Q  197 tggttattggttgc 210  Q
    ||||||||||||||    
T  49199334 tggttattggttgc 49199321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 43401844 - 43401653
Alignment:
Q  23 ctctcctccagtgtaggtcattgttagactgaactggttgtacttt-tcttggtgttgttatct---tttctctacnnnnnnnatcttgtttatcctttg 118  Q
    ||||||||||| ||||||||| ||| ||| ||||||| || ||  | ||||||||||||| |||   |||||||||       |||||||||||||||||    
T  43401844 ctctcctccagagtaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactctctttatcttgtttatcctttg 43401745  T
Q  119 gttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttgc 210  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43401744 gttagattgtgattttgctatgcacttgttttctagattagatctagattgttgttattgcttgtggttatttacatttggttattggttgc 43401653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 46860577 - 46860786
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| || |||||||| ||||||||||||| ||| ||| ||| || || ||| |||||||||||||||||||| |||          
T  46860577 atagtggattggagagatcaatctttcctccagagtaggtcattgttggaccgaattggatgaacattttttggtgttgttatcttttctttactctctt 46860676  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| |||| ||||||||| ||| ||||||| |||||||||||||    
T  46860677 tatcttgtttatcctttggttagattgtggttttgctatgcacttggtttatagattaggtctatattgttgttgttgtttgtggttatttacatttggt 46860776  T
Q  201 tattggttgc 210  Q
    ||||||||||    
T  46860777 tattggttgc 46860786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 43403704 - 43403596
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  43403704 atcttgtttatcctttggttagattgtggttttgctatgcacttgttttctagattagatctagattgttattattgcttgtggttatttacatttggtt 43403605  T
Q  202 attggttgc 210  Q
    |||||||||    
T  43403604 attggttgc 43403596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 36018993 - 36019159
Alignment:
Q  43 ttgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgca 142  Q
    ||||| ||| ||||||| || || ||| |||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||  ||  ||    
T  36018993 ttgttggaccgaactggatgaacattttttggtgttgttatcttttttctactctctttatcttgtttatcctttggttagattgtggttttgttaaaca 36019092  T
Q  143 cttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttg 209  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  36019093 cttgttttctagattagatctagattgttattgttgcttgtggtaatttacatttgattattggttg 36019159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 55302037 - 55301827
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||  ||||||||||||| ||| ||||| | || || |||||| ||||||||||||||||| |||          
T  55302037 atagtggattggagagatcaatctctcctccatagtaggtcattgttggaccgaacttggtgaacatttcttagtgttgttatcttttctttactctctt 55301938  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcactt-gttttctagactagatctagattgttgttattgcttgtgg-taatttacatttg 198  Q
     ||||||||||||||||||||  ||||||| ||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||| | ||| |||||||    
T  55301937 tatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattagatctagattgtttttattgcttgtggtttattcacatttg 55301838  T
Q  199 gttattggttg 209  Q
    |||||||||||    
T  55301837 gttattggttg 55301827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 6095664 - 6095456
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||  || || |||||||||||||||||||||||| |||          
T  6095664 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgtgtgaacatttcttggtgttgttatcttttctttactctctt 6095566  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggt 200  Q
     ||||||||||| | |||||| |||||||||||| |||| |||||  ||| |||||||| |||| ||||||||||||||||||||| ||||||||||| |    
T  6095565 tatcttgtttatgccttggttggattgtggttttgctatacacttcgtttatagactaggtctatattgttgttattgcttgtggttatttacatttgat 6095466  T
Q  201 tattggttgc 210  Q
    ||||||||||    
T  6095465 tattggttgc 6095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 41819572 - 41819381
Alignment:
Q  17 atcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatctttt-ctctacnnnnnnnatcttgtttatcct 115  Q
    ||||| ||||||||||| ||||||||||||| |||  |||||| || || ||| ||||||||||||| |||| ||||||       ||||||||||||||    
T  41819572 atcaatctctcctccagagtaggtcattgttggaccaaactgggtgaacatttattggtgttgttatttttttctctactttctttatcttgtttatcct 41819473  T
Q  116 ttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttgc 210  Q
    ||||||||||||||||||| ||||||||||| ||| | |||||| |||| ||||||||| |||||||||   |||||| ||||||| ||||||||    
T  41819472 ttggttagattgtggttttgctatgcacttggtttatggactaggtctatattgttgttgttgcttgtg---atttacttttggttgttggttgc 41819381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 54593807 - 54594017
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctcta--cnnnn 98  Q
    |||||||||| ||  |||||| ||||||||||| ||| ||||  ||| |||  |||||| || || |||||||||||||||||||||||| ||  |        
T  54593807 atagtggattggagagatcaatctctcctccagagtatgtcaa-gttggaccaaactgggtgaacatttcttggtgttgttatcttttctttagtctctc 54593905  T
Q  99 nnnatcttgtttatcctttggttag-attgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacattt 197  Q
       ||||||||||| | ||| || | ||||||||||| |||||||| || ||| |||||||  |||| ||| ||||||||||||||||| ||||| ||||    
T  54593906 tttatcttgtttattccttgctttggattgtggttttgctatgcacatggtttatagactatgtctatattcttgttattgcttgtggttatttatattt 54594005  T
Q  198 ggttattggttg 209  Q
    ||||||||||||    
T  54594006 ggttattggttg 54594017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 30236294 - 30236413
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    |||||||||||||||||||||||| |||       ||||||||||| | |||||| ||||||| ||||  |||||||||| ||| |||||||| |||| |    
T  30236294 tttcttggtgttgttatcttttctttactctctttatcttgtttataccttggttggattgtgtttttgttatgcacttggtttatagactaggtctata 30236393  T
Q  167 ttgttgttattgcttgtggt 186  Q
    |||||||| |||||||||||    
T  30236394 ttgttgttgttgcttgtggt 30236413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 40913500 - 40913546
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  40913500 atcttgtttatcctttggttagattgtggttttgctatgcacttgtt 40913546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 31340186 - 31340102
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggt 186  Q
    ||||||||||| | || ||| |||||||||||| ||||||||||| ||| |||||||| |||| ||| ||||| |||||||||||    
T  31340186 atcttgtttattccttagttggattgtggttttgctatgcacttggtttatagactaggtctatattattgttgttgcttgtggt 31340102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 47304461 - 47304543
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtg 184  Q
    ||||||||||| | || ||| |||||||||||| ||||||||||| ||| |||||||| |||| ||| ||||| |||||||||    
T  47304461 atcttgtttattccttagttggattgtggttttgctatgcacttggtttatagactaggtctatattattgttgttgcttgtg 47304543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 5270580 - 5270661
Alignment:
Q  106 tgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagat-tgttgttattgcttgtggt 186  Q
    ||||||| |||||||| |||||||||||| |  | |||||| || ||||| ||||||||||| | ||||| |||||||||||    
T  5270580 tgtttattctttggttcgattgtggttttgcattacacttggttgctagattagatctagatctattgttgttgcttgtggt 5270661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 42288110 - 42287967
Alignment:
Q  67 tttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctaga 166  Q
    |||||||||| ||||||||||||| |||       | ||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  42288110 tttcttggtgctgttatcttttctttaccctctttaacttgtttattccttggttggattgtggtttttctatgcacttgttttctagattagatctaga 42288011  T
Q  167 ttgttgttattgcttgtggtaatttacatttggttattggttgc 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  42288010 ttgttgttattgcttgtggttatttacatttggttattggttgc 42287967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 17450749 - 17450884
Alignment:
Q  71 ttggtgttgttatcttttctctacnnnnnnnatcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgt 170  Q
    |||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||||||    
T  17450749 ttggtgttgttatcttttctgtactctctttatcttgtttatcctttggttagattgtggttttgctatgcacttggtttctagattaggtttagattgt 17450848  T
Q  171 tgttattgcttgtggtaatttacatttggttattggttg 209  Q
    |||| |||||||||   |||||||||||||||| |||||    
T  17450849 tgttgttgcttgtg---atttacatttggttatcggttg 17450884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 7451322 - 7451429
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggtt 201  Q
    ||||||||||| |||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||   ||||    
T  7451322 atcttgtttattctttggttcgattgtggttttgttatgcacttgttttctagattagatctagattgttgttattgcttgtggttattgacaagaggtt 7451421  T
Q  202 attggttg 209  Q
    ||||||||    
T  7451422 attggttg 7451429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 45727032 - 45727239
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || ||| || ||||||||||||||||| |||          
T  45727032 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacattttttagtgttgttatcttttctttactctctt 45727130  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtgg-taatttacatttgg 199  Q
     |||||  |||| |||||||| |||||||||||| ||||||||||  ||| |||||||| |||| ||| ||||| |||||||||| | ||||||||||||    
T  45727131 tatctt--ttattctttggttggattgtggttttgctatgcacttagtttatagactaggtctatattattgttgttgcttgtggtttatttacatttgg 45727228  T
Q  200 ttattggttgc 210  Q
    ||||| |||||    
T  45727229 ttattagttgc 45727239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 33648290 - 33648454
Alignment:
Q  16 gatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnnatcttgtttatcct 115  Q
    |||||| ||||||||||| ||||||||||||| ||| ||||||| |  || ||| ||||||||||| ||||||||||||       ||||||||||| ||    
T  33648290 gatcaatctctcctccagagtaggtcattgttggaccgaactgggtaaacatttattggtgttgttgtcttttctctactctctttatcttgtttattct 33648389  T
Q  116 ttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgct 180  Q
    || |||  |||||| |||| |||||||||||  || |||| |||  ||||||||||||| |||||    
T  33648390 ttagtttaattgtgattttgctatgcacttggcttatagattaggcctagattgttgttgttgct 33648454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 35446949 - 35446788
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||  ||||||||||| ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  35446949 atagtggattggagagatcactctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 35446851  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatcta 164  Q
     ||||||||||| ||||||||  ||||||||||| |||||||||||  || |||||||||||||    
T  35446850 tatcttgtttatgctttggttgaattgtggttttgctatgcacttg-attatagactagatcta 35446788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 27637678 - 27637495
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||| ||| ||||||||||||| ||| ||||||| || |  |||||||||||||||||||||||| |||          
T  27637678 atagtggattggagagatcaatctctcctgcagagtaggtcattgttggaccgaactgggtgaatatttcttggtgttgttatcttttctttactctctt 27637579  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtg 184  Q
     ||||||||||| | || ||| |||||||||||| ||||||||||| ||| |||||||| |||| ||||||||| |||||||||    
T  27637578 tatcttgtttattccttagttggattgtggttttgctatgcacttggtttatagactaggtctatattgttgttgttgcttgtg 27637495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 213568 - 213781
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||  ||||||||   || ||| ||||||| || || ||||||||||||||||||||| || |||          
T  213568 atagtggattggagagatcaatctctcctccatagtaggtcaagtttggaccgaactgggtgaacatttcttggtgttgttatctttcctttactctctc 213667  T
Q  101 n--atcttgtttatcctttggtta-gattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacattt 197  Q
       ||||||||||| | ||| ||  |||||||||||| ||||||||||  ||  |||||||| |||| |||||||||||||||||||||  |||||||||    
T  213668 tttatcttgtttattccttgcttttgattgtggttttgctatgcacttagttaatagactaggtctatattgttgttattgcttgtggttttttacattt 213767  T
Q  198 ggttattggttgct 211  Q
    |||||||| |||||    
T  213768 ggttattgattgct 213781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 40751195 - 40751284
Alignment:
Q  117 tggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttg 209  Q
    |||||| ||||||||||| ||||||||||| ||| |||| ||| |||| ||||||||||||||||||||   |||||||||||||||||||||    
T  40751195 tggttaaattgtggttttgctatgcacttggtttatagattaggtctatattgttgttattgcttgtgg---tttacatttggttattggttg 40751284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 40147364 - 40147510
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||  ||| ||| ||||||| || || ||| || ||||| ||||||||||| |||          
T  40147364 atagtggattggagagatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtgaacatttttttgtgtttttatcttttctttactctatt 40147462  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgtt 148  Q
     ||||||||||||||||||||  |||||||||||  ||||||||||||    
T  40147463 tatcttgtttatcctttggttgaattgtggttttgttatgcacttgtt 40147510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 40763200 - 40763289
Alignment:
Q  117 tggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttg 209  Q
    |||||| ||| ||||||| ||||||||||| ||| |||| ||| |||| |||||||||||||||| |||   |||||||||| ||||||||||    
T  40763200 tggttaaattatggttttgctatgcacttggtttatagattaggtctatattgttgttattgcttatgg---tttacatttgattattggttg 40763289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 16640903 - 16640814
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaattt 191  Q
    |||||| |||| |||| |||| |||||||||||  |||||| ||| |||||||| || ||||||||| ||||| ||||||||||| ||||    
T  16640903 atcttgcttattctttagttaaattgtggttttgttatgcatttgatttctagattaaatctagatttttgttgttgcttgtggttattt 16640814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 5058148 - 5058334
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| |||||||| || ||||||||  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  5058148 atagtggattggagagatcaatctctcctctagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 5058246  T
Q  101 natcttgttta-tcctttggttagattgtggtttttctatgcacttgttttctagactagatc--tagattgttgttattgcttgtggt 186  Q
     |||||||||| |||||   || |||| ||||||| |||||||||||  || |||||||| ||  || ||||||||| |||||||||||    
T  5058247 tatcttgtttattccttgctttggattatggttttactatgcacttg-attatagactaggtctatatattgttgttgttgcttgtggt 5058334  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4160702 - 4160791
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttct 90  Q
    |||||||||| ||  |||||| ||||||||||| ||||||||||||| |||  |||||| |  |  ||| || |||||||||||||||||    
T  4160702 atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccaaactgggtaaatatttattagtgttgttatcttttct 4160791  T

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Target: scaffold0236 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 10607 - 10800
Alignment:
Q  16 gatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnnn-atcttgtttatcc 114  Q
    |||||| ||||||||||| ||||||||  ||| ||| ||||||| |  || ||||||||||||||||||||| ||||||        ||||||||||| |    
T  10607 gatcaatctctcctccagagtaggtcaa-gttggaccgaactgggtaaacatttcttggtgttgttatctttcctctactctcttttatcttgtttattc 10705  T
Q  115 tttggttagattgtggtttttctatgcacttgttttctagactagatctagattgttgttattgcttgtggtaatttacatttggttattggttg 209  Q
    |||| ||||||||| ||||| |||| |||||| |||||||| || ||||||||||||||| ||||||||||| |||| | ||||||||| |||||    
T  10706 tttgattagattgtagttttactatacacttgatttctagattaaatctagattgttgttgttgcttgtggttattttcttttggttatcggttg 10800  T

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Target: scaffold0466 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 7430 - 7616
Alignment:
Q  1 atagtggattagatcgatcaagctctcctccagtgtaggtcattgttagactgaactggttgtacttttcttggtgttgttatcttttctctacnnnnnn 100  Q
    |||||||||| ||  |||||| |||||||| || |||||| |  ||| ||| ||||||| || || |||||||||||||||||||||||| |||          
T  7430 atagtggattggaaagatcaatctctcctctagagtaggttaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctt 7528  T
Q  101 natcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatc--tagattgttgttattgcttgtggt 186  Q
     ||||||||||||||||||||  ||||||||||| ||||||||||| ||| |||||||| ||  || ||| ||||| |||||||||||    
T  7529 tatcttgtttatcctttggttgaattgtggttttgctatgcacttggtttatagactaggtctatatattattgttgttgcttgtggt 7616  T

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Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 1360 - 1291
Alignment:
Q  102 atcttgtttatcctttggttagattgtggtttttctatgcacttgttttctagactagatctagattgtt 171  Q
    ||||| |||||  ||||||| |||||||||||| || | |||||| |||||||| |||||||||||||||    
T  1360 atcttatttattttttggtttgattgtggttttactttacacttggtttctagattagatctagattgtt 1291  T

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