View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_4 (Length: 611)
Name: NF6409_low_4
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 245 - 611
Target Start/End: Complemental strand, 10730121 - 10729750
Alignment:
| Q |
245 |
ttaggggaggatctcatatgaacatttgagttggtgactgcacgaatactttattaatgcattcagtcaataatttgtatatatggtatacaaaattaaa |
344 |
Q |
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| T |
10730121 |
ttaggggaggatctcatgtgaacatttgagttggtaactgcacgaatacttt--taatgcattcagtcaataatttgtat----ggtatacaaaattaaa |
10730028 |
T |
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| Q |
345 |
ttgcaaatataaatacaaataccttcaacaaaatttgtccatattgatagctttatgatagacatagataggagtatatgatacgtatatttgggattac |
444 |
Q |
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| T |
10730027 |
ttgcacatataaatacaaataccttcaacaaaatttgtccatattgatagctttatgatagacatagataggagtatatgatacgtatatttgggattac |
10729928 |
T |
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| Q |
445 |
cctaacttaactttcataaccttgagactgacagagaaata----------------tacattttctgctaatcttaaattaattccttcccatttgttt |
528 |
Q |
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| T |
10729927 |
cctaacttaactttcataaccttgagactgacatataaatatactactactctaacgtacattttctgctaatc-----ttaattccttcccatttgttt |
10729833 |
T |
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| Q |
529 |
gtttacttcctttcttattcactatttcaacttccaatgcatcgtggtcctcagatgttgccatttcacgttctcttctgact |
611 |
Q |
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| T |
10729832 |
gttttcttcctttcttattcactatttcaacttccaatgcatcgtggtcctcagatgttgccatttcacgttctcttctgact |
10729750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 10730389 - 10730149
Alignment:
| Q |
7 |
gaaggagcacagacacaaagatggatggtggggacaatggggacaaagttgcagtgttggagatttggatttgggaataggtaagtaggatggatgagat |
106 |
Q |
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| T |
10730389 |
gaagcagcacaaacacaaagatggatggtggggacaatggggacaaagttgcagtgttggagatttggatttggtaataggta-gtaggatggatgagat |
10730291 |
T |
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| Q |
107 |
gagacttgagagtgtttatgagatgaaaaaccccactcactgccatggtatgctgtcgtggccctttctacttttaaggctaaatacaacccaaactcca |
206 |
Q |
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| T |
10730290 |
gagacttgagagtgtttatgagatgaaaaaccccactcactgccatggtatgctgtcgtggccctttctacttttaaggctaaatacaacccaaactcca |
10730191 |
T |
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| Q |
207 |
aggtaggagtaaattttcagcttcaaaaaataatttcattag |
248 |
Q |
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| T |
10730190 |
aggtaggagtaaattttcagcttcaaaaaataatttcattag |
10730149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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