View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6409_low_42 (Length: 215)
Name: NF6409_low_42
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 6958695 - 6958894
Alignment:
| Q |
1 |
tcgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttga |
100 |
Q |
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| T |
6958695 |
tcgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttga |
6958794 |
T |
|
| Q |
101 |
attcaatatatt---aaccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgatgcttctacatg |
197 |
Q |
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| T |
6958795 |
attcaatatatttagaaccctatctttattaatagtaaagcacaaagaggtttcagaaggacattacacataatagaacctcggtcgatgcttctacatg |
6958894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 30575384 - 30575204
Alignment:
| Q |
18 |
ttttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatatt---aa |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
30575384 |
ttttaaagattgaagttttatgctgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagctagcatattctttgaattcaatatattcagga |
30575285 |
T |
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| Q |
115 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgatgcttctaca |
195 |
Q |
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| T |
30575284 |
ccctatctttattaacaggaaaacacagagagattcctgaaggacattacacacaacagaaccacagtcgatgcttctaca |
30575204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 23007116 - 23006936
Alignment:
| Q |
18 |
ttttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatatt---aa |
114 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| | |
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| T |
23007116 |
ttttaaagattgaagttttatgccgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagcaagcatattctttgaattcaatatattcagga |
23007017 |
T |
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| Q |
115 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgatgcttctaca |
195 |
Q |
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||||||||||||||| |||||| |||| ||||||||| |||| |||||||||| || |||||| | |||||||||||||| |
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| T |
23007016 |
ccctatctttattaacaggaaaacacagagaggttcctgaaggacattacacacaacagaaccacactcgatgcttctaca |
23006936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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