View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6409_low_6 (Length: 551)
Name: NF6409_low_6
Description: NF6409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6409_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Complemental strand, 45709392 - 45708866
Alignment:
| Q |
19 |
atatctcttaatacatgatcatattaagttaatgtctagagcctaaatcacgtacgtgcatgtgatgtgatgtgacacaaaattaaatttgtatttcttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
45709392 |
atatctcttaatacatgatcatattaagttaatgtctagagcctaaatcacgtacgtgcatgtgatgtga-----cacaaaattaaatttatatttcttg |
45709298 |
T |
|
| Q |
119 |
aaaggaaaaccttggtgtgcaagtaatatactcctacttatgttagtgatttgtgcagtttagagaactggtattacaggatactgctacttatgactgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45709297 |
aaaggaaaaccttggtgtgcaagtaatatactcctacttatgttagtgatttgtgcagtttagagaactggtattacaggatactgctacttatgactgg |
45709198 |
T |
|
| Q |
219 |
ccagttggagaatgcgactgttgctgttgatgccttgtctgtatggtaagtattctgtgcctcctcttcctataannnnnnnnnnaaatttaatcagtta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45709197 |
ccagttggagaatgcgactgttgctgttgatgccttgtctgtatggtaagtattctgtgcctcctcttcctataaaatttcttttaaatttaatcagtta |
45709098 |
T |
|
| Q |
319 |
tttctttattaaaatactactcctagttattaata--nnnnnnnngaaagagtactcctagttattttaattacatcaacaataaaatttaatcaatgtg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45709097 |
tttctttattaaaatactactcctagttattaatatcttttttttgaaagagtactcctagttattttaattacatcaacaataaaatttaatcaatgtg |
45708998 |
T |
|
| Q |
417 |
ctcttatatttaaggatggagtactctttg-----nnnnnnnnnaagtttaatttacaagtttggtgactaatgtactgaatttatttaattggttttgc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45708997 |
ctcttatatttaaggatggagtactctttgttttttttttttttaagtttaatttacaagtttggtgactaatgtactgaatttatttaattggttttgc |
45708898 |
T |
|
| Q |
512 |
agtatgactatcaatgggtgggaaatgatgat |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45708897 |
agtatgactatcaatgggtgggaaatgatgat |
45708866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University