View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_high_1 (Length: 571)
Name: NF6410_high_1
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 6089688 - 6089230
Alignment:
| Q |
17 |
cataattcatgttcttcttctaattctatcaaggatttagagtgttctaatttaatgatgcgtttttcaagagaagatcaaggaaaaagggtcatgaata |
116 |
Q |
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| T |
6089688 |
cataattcatgttcttcttctaattctatcaaggatttagagtgttctaatttaatgatgcgtttttcaagagaagatcaaggaaaaagggtcatgaata |
6089589 |
T |
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| Q |
117 |
tttcttcttctaatccttattttgagactttgaataacaatcaaggaaataataataacccttttctttatcaagcacaaaacattcaaaatcttagaca |
216 |
Q |
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| T |
6089588 |
tttcttcttctaatccttattttgagactttgaataacaatcaaggaaataataataacccttttctttatcaagcacaaaacattcaaaatcttagaca |
6089489 |
T |
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| Q |
217 |
atttgatgaacaacatagtagtacaagtactatgatgttgaataatcatgaacctttgtctttgtcactttcatcaaataaaagtgttagtagtaattta |
316 |
Q |
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| T |
6089488 |
atttgatgaacaacatagtagtactagtactatgatgttgaataatcatgaacctttgtctttgtcactttcatcaaataaaagtgttagtagtaattta |
6089389 |
T |
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| Q |
317 |
cctttggagttgaatctacaaagatatggatctatgatttatggtggtggaggtgtgattcaagggttggttgaaggaggaggaggaagtggtggttcag |
416 |
Q |
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| T |
6089388 |
cctttggagttgaatctacaaagatatggatctatgatttatggtggtggaggtgtgattcaaggtttggttgaaggagg---aggaagtggtggttcag |
6089292 |
T |
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| Q |
417 |
ttccatttactggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaa |
478 |
Q |
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| T |
6089291 |
ttccatttactggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaa |
6089230 |
T |
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