View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_high_10 (Length: 348)
Name: NF6410_high_10
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 2151799 - 2151460
Alignment:
| Q |
1 |
tgtgaattatgtgactaaaacctagacttacaaactaataaccattacaaattnnnnnnnn------taaacatcaaacaataatttaccatgtgcatct |
94 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2151799 |
tgtgaattatgtgactaaaacctagactcacaaactaataaccattacaaattaaaaaaaaaaaaaataaacatcaaacaataatttaccatgtgcatct |
2151700 |
T |
|
| Q |
95 |
caatacnnnnnnnnnn--tgtaatttataagcaagtaaataaacaacgatgggttgatagcttagtcacaaatgaagcatcacggtttgaaaagtagtag |
192 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151699 |
caatacaaaaaaaaaaaatgtaatttataagccagtaaataaacaacgatgggttgatagcttagtcacaaatgaagcatcacggtttgaaaagtagtag |
2151600 |
T |
|
| Q |
193 |
aaattcacaaactatagacaagttcatgagtcaacaatggcataacaatgttcaagttcaattaatacacaagataataaatcagtagggccaagtgact |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2151599 |
aaattcacaaactatagacaagttcatgagtcaacaaagggataacaatgttcaagttcaattaatagacaagataataaatcagtagggccaagtgact |
2151500 |
T |
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| Q |
293 |
atgactaggcctttatttggatttgcgtt-ggtagaaaat |
331 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
2151499 |
atgactaggcctttatttggatttgcgttgggtagaaaat |
2151460 |
T |
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