View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_high_16 (Length: 237)
Name: NF6410_high_16
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 45212794 - 45212631
Alignment:
| Q |
58 |
taaaacatttaactactatgtatgtatacctgagatattttctttctgtacactctccttttcatatgctagtctaaacgtgaaattaagccctcaaaat |
157 |
Q |
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| T |
45212794 |
taaaacatttaactactatgcatgtatacctgagatattttctttctgtacactctccttttcatatgctagtctaaacgtgaaattaagccctcaaaat |
45212695 |
T |
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| Q |
158 |
atgcaatagcactaatccttgaccacctgcttaaacatagtttgatactgtatcaagaactaac |
221 |
Q |
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| T |
45212694 |
atgcaatagcactaatccttgaccacctgcttaaacatagtttgatactgtatcaagaactaac |
45212631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45212823 - 45212794
Alignment:
| Q |
1 |
aaagatttgatgcaaacaaatttgttatat |
30 |
Q |
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| T |
45212823 |
aaagatttgatgcaaacaaatttgttatat |
45212794 |
T |
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