View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_high_3 (Length: 499)
Name: NF6410_high_3
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 20233887 - 20234360
Alignment:
| Q |
11 |
cacagacaaagacacttttgcttgaagtaacaaaaatgacaatccatcattgttgtcatcacaagttacatgagaggatacctaaaagaagctacattgn |
110 |
Q |
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| T |
20233887 |
cacagacaaagacacttttgcttgaagtaacaaaaatgacaatccatcattgttgtcatcacaagttacatgagaggatacctaaaagaagctacattgt |
20233986 |
T |
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| Q |
111 |
nnnnnnnnaatcctttagtaaaacccaaaacgatcctttgctgtaaaaagaacatcatcatgccttagaagacattgttgagcaaaaggttgtgaacttg |
210 |
Q |
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| T |
20233987 |
ttttttt-aatcctttagtaaaacccaaaacgatcctttgctgtaaaaagaacatcatcatgccttaaaagacattgttgagcaaaaggttgtgaacttg |
20234085 |
T |
|
| Q |
211 |
tgatagggctaaaattaattgaaccaattgcatgatgacaattggcataagaatattggttagtagaagcacaagtctagtacagatggaaagaaattat |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20234086 |
tgatagggctaaaattaattgaaccaattgcatggtgacaattggcataagaatattggttagtagaagcacaagtctagtacagatggaaagaaattat |
20234185 |
T |
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| Q |
311 |
gattgatgttgtggtcttatacttt--tatatatacaacaaacagcacatgatatgttgcatgtgagttcttatcctaaagtttattttttatgatataa |
408 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20234186 |
gattgatgttgtggtcttatacttttatatatatacaacaaacagcacatgatatgttgcatgtgagttcttatcctaaagtttattttttatgatataa |
20234285 |
T |
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| Q |
409 |
ttgaagctatgacaaaaactggaaaatggtatcccatgctttactcacatagtaatatgtctattaagtaataat |
483 |
Q |
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| T |
20234286 |
ttgaagctatgacaaaaactggaaaatggtatcccatgctttactcacatagtaatatgtctattaagtaataat |
20234360 |
T |
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