View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_low_12 (Length: 267)
Name: NF6410_low_12
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 26902248 - 26902126
Alignment:
| Q |
145 |
cattcggattcgggtcggatcctacatttctcgaaccgtcaccggaatcctccacaaccgagagaaatgacaggatcactcctcgcaagattcctccccc |
244 |
Q |
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| T |
26902248 |
cattcggattcgggtcggatcctacatttcttgaaccatcaccggaatcctccaccaccgagagaaatgacaggatcactcctcgcaagattcctcctcc |
26902149 |
T |
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| Q |
245 |
gccgatcaccaccgccgcagagc |
267 |
Q |
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| T |
26902148 |
gtcgatcaccaccgccgcagagc |
26902126 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 26902384 - 26902310
Alignment:
| Q |
9 |
acatcatcactcccacacccattccctatataaactcccccattcttctctcatccctccaattccaaatcctga |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26902384 |
acatcatcactcccacacccattccctatataaactcccccattcttctctcatccctccaattccaaatcctga |
26902310 |
T |
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