View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_low_18 (Length: 209)
Name: NF6410_low_18
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_low_18 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 24633689 - 24633783
Alignment:
| Q |
18 |
ggtatgacatgtgagtgttgatctatgaaagcaccgacacaaatacggacatttgacacaacactaacgctgacatgtagacattgataataaat |
112 |
Q |
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| T |
24633689 |
ggtatgacatgtgagtgttggtctatgaaagcaccaacacaaatacggacatttgacacgacactaacgctgacatgtagacattgataataaat |
24633783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 33384470 - 33384342
Alignment:
| Q |
19 |
gtatgacatgtgagtgttgatctatgaaagcaccgacacaaatacggacatttgacacaacactaacgctgacatgtagacattgataataaatttaaaa |
118 |
Q |
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| T |
33384470 |
gtatgacatgtgaccgttagtctatgaaagctcccacacaaacacggtcatttgacacgatactaacgctggcatgtcgacattggtaataattttagaa |
33384371 |
T |
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| Q |
119 |
aatgcaatacctgaacgtaaccacatgtg |
147 |
Q |
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| T |
33384370 |
aatgcaacaactgaacgtagccacatgtg |
33384342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 33258670 - 33258579
Alignment:
| Q |
87 |
ctgacatgtagacattgataataaatttaaaaaatgcaatacctgaacgtaaccacatgtgcgggtgttagttgtacacaag-aaaattgag |
177 |
Q |
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| T |
33258670 |
ctgacatgtcggcattggtaataattttagaaaatgcatcaactgaatgtaaccacatgtgcagatgttagttgtacccaagcaaaattgag |
33258579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 33415094 - 33415053
Alignment:
| Q |
39 |
tctatgaaagcaccgacacaaatacggacatttgacacaaca |
80 |
Q |
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| T |
33415094 |
tctatgaaagcactgacacaaatatggacatttgacacaaca |
33415053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 2791 - 2700
Alignment:
| Q |
87 |
ctgacatgtagacattgataataaatttaaaaaatgcaatacctgaacgtaaccacatgtgcgggtgttagttgtacacaag-aaaattgag |
177 |
Q |
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| T |
2791 |
ctgacatgtcggcattggtaataattttagaaaatgcatcaactgaatgtaaccacatgtgcagatgttagttgtacccaagcaaaattgag |
2700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 17445244 - 17445322
Alignment:
| Q |
57 |
caaatacggacatttgacacaacactaacgctgacatgtagacattgataataaatttaaaaaatgcaatacctgaacg |
135 |
Q |
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| T |
17445244 |
caaatacgaacatttgacacgacactaacgttgacatgctgactttggtaataattttagaaaatgcaacaactgaacg |
17445322 |
T |
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