View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_low_20 (Length: 206)
Name: NF6410_low_20
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 31719595 - 31719767
Alignment:
| Q |
17 |
ttatactaatcataatgaaaaacaaacacattacttaaactcttaaataaacttcaaagaacacattatagtaacaaagagttagaacatcaccttttgt |
116 |
Q |
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| T |
31719595 |
ttatactaatcataatgaaaaacaaacacattacttaaactcttaaataaacttgaaagaacacattatagtaacaaagagttagaacatcaccttttgt |
31719694 |
T |
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| Q |
117 |
tttcatgcttgtgtcttacaagcaaagcagaagcaaaagaacccttaccaatttgttctagtacttcatactg |
189 |
Q |
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| T |
31719695 |
tttcatgcttgtgtcttacaagcaaagcagaagcaaaagaacccttaccaatttgttctagtacttcatactg |
31719767 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 38241469 - 38241386
Alignment:
| Q |
106 |
tcaccttttgttttcatgcttgtgtcttacaagcaaagcagaagcaaaagaacccttaccaatttgttctagtacttcatactg |
189 |
Q |
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| T |
38241469 |
tcactttttcttttcatgcttgtgcctcacaagtaaagcacaaccaaatgcacctttaccaatctgttctagaacttcatactg |
38241386 |
T |
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