View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6410_low_4 (Length: 487)
Name: NF6410_low_4
Description: NF6410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6410_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 127 - 471
Target Start/End: Original strand, 3823989 - 3824333
Alignment:
| Q |
127 |
taatttgtggttgtgaccacacatgcatcattgctctagaataagttgcatgcaccaaatctcttagtgggtttattcaagtttaataatattaaaaata |
226 |
Q |
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| T |
3823989 |
taatttatggttgtgaccacacatgcatcattgctctagaataagttggatgcaccaaatctcttagttggtttattcaagtctaataaaattaaaaata |
3824088 |
T |
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| Q |
227 |
aggtacgagtaatacatatacgggtcctcttaaagtatgttatgagcttgtgaaattaatctcataaattatgatttgagtcatgtacgtgtaaagaagt |
326 |
Q |
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| T |
3824089 |
aggtacgagtaatacatatacgggtcctcttaaagtatgttatgagcttgtgaaattaatctcataaattatgatttgagtcatgtacgtgtaatgaagt |
3824188 |
T |
|
| Q |
327 |
cttagttttaataaaaagtttacaaagtatattaaaattaaactcataagttaataattcaaatcaattcgattaacatgatttgaattattgaattcat |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3824189 |
cttagttttaataaaaagtttacaaagtatattaaaattaaactcataagttaataattcaaatcaattcgattaacatgatttgaattattgaattcat |
3824288 |
T |
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| Q |
427 |
caaatcaatcaaattcatcaaagcaaacagtagattctatgtcat |
471 |
Q |
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| T |
3824289 |
caaatcaatcaaattcatcaaagcaaacagtagattctatgtcat |
3824333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3823835 - 3823910
Alignment:
| Q |
1 |
atttaaacacacaaacaagaatacacattaatcattaatcaatgttttcaataataaaataattgcattaaattga |
76 |
Q |
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| T |
3823835 |
atttaaacacacaaacaagaatacacattaatcattaatcaatgttttcaataataaaataattgcattaaattga |
3823910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 3823941 - 3823984
Alignment:
| Q |
106 |
gtgagagtgcttaactcattttaatttgtggttgtgaccacaca |
149 |
Q |
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| T |
3823941 |
gtgagagtgtttaactcattttaatttgtggttgtgaccacaca |
3823984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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