View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6411_high_1 (Length: 630)
Name: NF6411_high_1
Description: NF6411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6411_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 17 - 620
Target Start/End: Complemental strand, 26881484 - 26880881
Alignment:
| Q |
17 |
ttgatagtcgcaagattatcatcacctaggagattcagagagcggactagtttagtcgcttacctacagaagttgctcgctgacattctaatagagttga |
116 |
Q |
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| T |
26881484 |
ttgatagtcgcaagattatcatcacctaggaatttcagagagcggactagtttagtcgcttacctacagaagttgctctctgacattctaatagagttga |
26881385 |
T |
|
| Q |
117 |
attttttcgggagtctgacacttggctcctctgacaatgtgaacatggcgtgataactaacagtgaatagttgacatgatatcacaggggattggtgaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26881384 |
attttttcgggagtctgacacttggctcctctgacaatgtgaacatggcgtgataactaacagtgaatagttgacatgatatcacaggggattggtgaaa |
26881285 |
T |
|
| Q |
217 |
ccgtttgccatatctaaattgtgatatattcacggggattggagaaactgattgccatattcatgcagggcgcttgatatactcatgggggattggtgaa |
316 |
Q |
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||||||||||||| ||||| ||||||||||||||| |||||| ||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
26881284 |
ccgtttgccatatgtaaatcgtgatatattcacggtgattggtgaaaccgattgccatattcacgcatgacgcttgatatactcatgggggattggtgaa |
26881185 |
T |
|
| Q |
317 |
accgatcgccataacccacgcttgacgcttgaaacactaagcgttaagaaatgagaatcatggatgatgtttttagtttttgtatctctttcattttcat |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26881184 |
accgattgccataacccacgcttgacgcttgaaacactaagcgttaagaaatgagaatcatggatgatgtttttagtttttgtatctctttcattttcat |
26881085 |
T |
|
| Q |
417 |
atcaagaaacaaggacaactatagaagtatcttgtatggcttatggttgatttcttaaattcaccctttagttttatttgtcgtgtgagacgtgattgtt |
516 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26881084 |
atcgagaaacaaggacaactatagaagtatcttgtatggcttatggttgatttcttaaattcaccctttagttttatttgtcgtgtgagacgtgattgtt |
26880985 |
T |
|
| Q |
517 |
ataggatgtcgggtttatgtcatacctgagcagtgtttcttcataaatgattttaatcatactcgtatcttatctactgatcatgttgtacttatggtcc |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
26880984 |
ataggatgtcgggtttatgtcatacctgagcagtgtttcttcataaatgattttaatcacactcatatcttatctactgatcatgttgtacttatggtct |
26880885 |
T |
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| Q |
617 |
tatg |
620 |
Q |
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|||| |
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| T |
26880884 |
tatg |
26880881 |
T |
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