View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6411_high_5 (Length: 237)
Name: NF6411_high_5
Description: NF6411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6411_high_5 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 6370375 - 6370168
Alignment:
| Q |
27 |
ggacaaaattcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttca |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6370375 |
ggacaaaattcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttca |
6370276 |
T |
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| Q |
127 |
tgatttatactaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattcaaaacaaattatttcttaaaccacgagta |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
6370275 |
tgatttatactaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattaaaaacaaatcatttcttaaaccacgagta |
6370176 |
T |
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| Q |
227 |
ataactca |
234 |
Q |
| |
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|||||||| |
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| T |
6370175 |
ataactca |
6370168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 6378840 - 6378633
Alignment:
| Q |
27 |
ggacaaaattcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttca |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6378840 |
ggacaaaattcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttca |
6378741 |
T |
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| Q |
127 |
tgatttatactaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattcaaaacaaattatttcttaaaccacgagta |
226 |
Q |
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| T |
6378740 |
tgatttatactaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattaaaaacaaatcatttcttaaaccacgagta |
6378641 |
T |
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| Q |
227 |
ataactca |
234 |
Q |
| |
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|||||||| |
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| T |
6378640 |
ataactca |
6378633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 6384098 - 6383983
Alignment:
| Q |
22 |
acttaggacaaaattcccccaaattatttagtcttcatatgtttcattgta-ttgatcttctagctcccataactttcaagagatgtcttggttgactta |
120 |
Q |
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|||| |||||||||| | |||| |||||| ||||| ||||| ||| ||||| ||| |||| || || ||||||||| || ||||| ||||||||||||| |
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| T |
6384098 |
acttgggacaaaatttctccaagttatttggtctttatatgcttcgttgtacttggtcttttaacttccataacttccataagatgacttggttgactta |
6383999 |
T |
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| Q |
121 |
ctttcatgatttatac |
136 |
Q |
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||| || |||||||| |
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| T |
6383998 |
cttcaatcatttatac |
6383983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 23736899 - 23736822
Alignment:
| Q |
73 |
ttgatcttctagctcccataactttcaagagatgtcttggttgacttactttcatgatttatactaaaaaagactcaa |
150 |
Q |
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| T |
23736899 |
ttgatattcttgcttccataactttaatgagatgtactggttgacttagttccatgattcatacacaaaaagactcaa |
23736822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 1349 - 1136
Alignment:
| Q |
16 |
cttgggacttagg-acaaaattcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggtt |
114 |
Q |
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||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
1349 |
cttgggacttagggacaaagttcccccaagttatttggtcttcatatgtttcattgtattgatcttctggcttccataactttcaagagatatcttggtt |
1250 |
T |
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| Q |
115 |
gacttactttcatgatttatactaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattcaaaacaaattatttctt |
214 |
Q |
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|||||||||||||||||||||| |||||||| | ||||| ||||| | ||||||| ||||||||||||||||| | |||||||||| ||||| || |
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| T |
1249 |
gacttactttcatgatttataccaaaaaagatttaaaacgcctataatttttggttagggaagaaagagaattacaataactcaaaacaaaatatttttt |
1150 |
T |
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| Q |
215 |
aaaccacgagtaat |
228 |
Q |
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|||||||||||||| |
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| T |
1149 |
aaaccacgagtaat |
1136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 33863267 - 33863358
Alignment:
| Q |
73 |
ttgatcttctagctcccataactttcaagagatgtcttggttgacttactttcatgatttatactaaaaaagactcaaaacatctatagagt |
164 |
Q |
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||||||| || ||| |||| ||||||| ||||||||| ||||| |||| |||||||| ||||| |||||||||||||||||||||| |||| |
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| T |
33863267 |
ttgatctccttgcttccattactttcacgagatgtctaggttggcttaacttcatgatctataccaaaaaagactcaaaacatctatggagt |
33863358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 10571940 - 10571881
Alignment:
| Q |
95 |
tttcaagagatgtcttggttgacttactttcatgatttatactaaaaaagactcaaaaca |
154 |
Q |
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||||| ||||||||||||||| | || ||||||||||||||| |||| ||||||||||| |
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| T |
10571940 |
tttcatgagatgtcttggttggcctaatttcatgatttatacctaaaaggactcaaaaca |
10571881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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