View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6411_high_7 (Length: 236)
Name: NF6411_high_7
Description: NF6411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6411_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 14322486 - 14322274
Alignment:
| Q |
7 |
acatcatcaacaaaataaaaaatgcaagaaagttgtcgaagagatttgattgaaggggcacagaaaacaaagaatacataaattgaacagccnnnnnnnc |
106 |
Q |
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| T |
14322486 |
acatcaacaacaaaataaaaaatgcaaaaaaggtgtcgaagagatttgattgaaggggcacagaaaacaaagaatacataaattgaacagccaaaaaaac |
14322387 |
T |
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| Q |
107 |
ataacagcaggcagacaaaagcaaaaactaaataacagagaattaaatagggtcnnnnnnncaagtcatggaaccaagagcaagataaacgcaactaact |
206 |
Q |
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| T |
14322386 |
ataacagcagacagacaaaagcaaaaaataaataacagagaattaaatagggtctttttttcaagtcatggaaccaagagcaagataaacgcaactaact |
14322287 |
T |
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| Q |
207 |
tatgtgcatatca |
219 |
Q |
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||||||||||||| |
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| T |
14322286 |
tatgtgcatatca |
14322274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 14321314 - 14321104
Alignment:
| Q |
9 |
atcatcaacaaaataaaaaatgcaagaaagttgtcgaagagatttgattgaaggggcacagaaaacaaagaatacataaattgaacagccnnnnnnncat |
108 |
Q |
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|||| |||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
14321314 |
atcaacaacaaaataaaaaatgcaaaaaaggtgtcaaagagatttgatggaaggggcacagaaaacaaagaatgcataaattgaacagccaaaaaaacat |
14321215 |
T |
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| Q |
109 |
aacagcaggcagacaaaagcaaaaactaaataacagagaattaaatagggtcnnnnnnncaagtcatggaaccaagagcaagataaacgcaactaactta |
208 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14321214 |
aacagcagacagacaaaagcaaaaaataaataacagagaattaaatagggtcttttttccaagtcatggaaccaagagcaagataaacgcaactaactta |
14321115 |
T |
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| Q |
209 |
tgtgcatatca |
219 |
Q |
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| T |
14321114 |
tgtgcatatca |
14321104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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