View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6411_low_11 (Length: 202)

Name: NF6411_low_11
Description: NF6411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6411_low_11
NF6411_low_11
[»] chr7 (39 HSPs)
chr7 (1-194)||(10899052-10899245)
chr7 (48-160)||(48646047-48646159)
chr7 (47-194)||(7258272-7258419)
chr7 (52-154)||(44333141-44333243)
chr7 (47-161)||(35727696-35727810)
chr7 (52-166)||(48788679-48788793)
chr7 (52-194)||(43457459-43457601)
chr7 (47-169)||(44334453-44334575)
chr7 (47-166)||(48777253-48777372)
chr7 (52-194)||(35729065-35729207)
chr7 (52-158)||(45583686-45583792)
chr7 (48-194)||(7259663-7259809)
chr7 (52-157)||(46286505-46286610)
chr7 (47-166)||(42477378-42477496)
chr7 (52-192)||(48647424-48647564)
chr7 (66-160)||(8374930-8375024)
chr7 (79-161)||(13578332-13578414)
chr7 (52-166)||(30925015-30925129)
chr7 (47-165)||(12223707-12223825)
chr7 (54-161)||(39708107-39708214)
chr7 (111-194)||(45584475-45584558)
chr7 (53-161)||(8375595-8375703)
chr7 (47-150)||(21062814-21062917)
chr7 (47-157)||(8048800-8048910)
chr7 (111-160)||(44530624-44530673)
chr7 (111-166)||(33607630-33607685)
chr7 (111-166)||(44529089-44529144)
chr7 (132-194)||(5930112-5930174)
chr7 (48-163)||(2677796-2677911)
chr7 (65-160)||(24844588-24844683)
chr7 (51-150)||(34704910-34705009)
chr7 (111-166)||(34888930-34888985)
chr7 (111-166)||(43461735-43461789)
chr7 (47-100)||(385684-385737)
chr7 (111-160)||(12220084-12220133)
chr7 (111-160)||(32793232-32793281)
chr7 (47-91)||(21561876-21561920)
chr7 (52-84)||(24844544-24844576)
chr7 (47-91)||(24934801-24934845)
[»] chr2 (33 HSPs)
chr2 (47-166)||(32766246-32766365)
chr2 (52-166)||(31091534-31091648)
chr2 (47-166)||(32764935-32765054)
chr2 (56-169)||(24459450-24459563)
chr2 (52-166)||(31090166-31090280)
chr2 (53-159)||(34037687-34037793)
chr2 (52-194)||(17330209-17330351)
chr2 (47-162)||(5915003-5915118)
chr2 (52-192)||(40000315-40000455)
chr2 (48-194)||(2910098-2910244)
chr2 (93-166)||(14704049-14704122)
chr2 (47-160)||(24458057-24458170)
chr2 (47-159)||(2911505-2911617)
chr2 (111-194)||(7073700-7073783)
chr2 (71-160)||(17466841-17466930)
chr2 (49-166)||(34582677-34582794)
chr2 (47-159)||(39015002-39015114)
chr2 (47-161)||(12746213-12746327)
chr2 (52-194)||(31814323-31814463)
chr2 (109-160)||(38985002-38985053)
chr2 (48-166)||(38853753-38853871)
chr2 (48-165)||(38854787-38854904)
chr2 (111-159)||(21733785-21733833)
chr2 (52-98)||(14705122-14705168)
chr2 (47-160)||(8420010-8420123)
chr2 (47-166)||(39016390-39016507)
chr2 (70-158)||(5914324-5914412)
chr2 (48-160)||(9616048-9616160)
chr2 (111-166)||(17466102-17466157)
chr2 (47-91)||(14887580-14887624)
chr2 (111-169)||(7412153-7412211)
chr2 (137-166)||(37607189-37607218)
chr2 (47-163)||(11985688-11985804)
[»] chr8 (22 HSPs)
chr8 (52-166)||(35178811-35178925)
chr8 (47-194)||(32898424-32898571)
chr8 (47-194)||(35177392-35177539)
chr8 (48-194)||(1952949-1953094)
chr8 (52-194)||(10407563-10407705)
chr8 (69-160)||(45476181-45476272)
chr8 (52-149)||(41754000-41754097)
chr8 (52-158)||(41754810-41754915)
chr8 (111-166)||(5965449-5965504)
chr8 (48-166)||(31075297-31075414)
chr8 (47-92)||(43539881-43539926)
chr8 (47-91)||(43539102-43539146)
chr8 (51-160)||(5738036-5738145)
chr8 (47-91)||(59549-59593)
chr8 (107-163)||(5736899-5736955)
chr8 (113-164)||(10406269-10406320)
chr8 (49-159)||(9626474-9626584)
chr8 (115-169)||(12637762-12637816)
chr8 (111-169)||(28619549-28619607)
chr8 (111-160)||(28619050-28619099)
chr8 (48-93)||(36032704-36032749)
chr8 (120-160)||(45476576-45476616)
[»] chr3 (34 HSPs)
chr3 (47-166)||(17701926-17702045)
chr3 (52-166)||(17700520-17700634)
chr3 (52-166)||(48572987-48573101)
chr3 (52-162)||(55389480-55389590)
chr3 (47-193)||(52318297-52318443)
chr3 (47-166)||(55388070-55388189)
chr3 (52-169)||(34263807-34263924)
chr3 (47-167)||(2592013-2592133)
chr3 (47-161)||(33428447-33428561)
chr3 (47-166)||(47118058-47118177)
chr3 (52-165)||(2591629-2591742)
chr3 (59-161)||(20464078-20464180)
chr3 (52-166)||(36278954-36279068)
chr3 (52-161)||(45600951-45601059)
chr3 (82-164)||(11773060-11773142)
chr3 (52-194)||(52316981-52317123)
chr3 (94-166)||(48574466-48574538)
chr3 (66-162)||(48808382-48808478)
chr3 (53-194)||(50753820-50753961)
chr3 (52-163)||(19115157-19115267)
chr3 (111-166)||(36280324-36280379)
chr3 (47-166)||(47075358-47075477)
chr3 (58-160)||(19114541-19114643)
chr3 (111-166)||(53959107-53959162)
chr3 (54-164)||(3671043-3671152)
chr3 (77-149)||(47427887-47427959)
chr3 (59-125)||(19331117-19331183)
chr3 (47-91)||(26652686-26652730)
chr3 (130-166)||(48809661-48809697)
chr3 (48-91)||(20464543-20464586)
chr3 (133-163)||(45598988-45599018)
chr3 (87-166)||(49261544-49261620)
chr3 (52-145)||(53957677-53957769)
chr3 (111-159)||(33427813-33427860)
[»] chr5 (28 HSPs)
chr5 (52-162)||(28591125-28591235)
chr5 (52-166)||(2464671-2464785)
chr5 (52-166)||(2466781-2466895)
chr5 (52-166)||(8074453-8074567)
chr5 (52-194)||(4592863-4593005)
chr5 (52-165)||(9538057-9538170)
chr5 (47-166)||(546043-546161)
chr5 (47-166)||(25590428-25590546)
chr5 (71-161)||(19182971-19183061)
chr5 (47-157)||(21069286-21069396)
chr5 (48-144)||(18400188-18400284)
chr5 (47-166)||(14891154-14891269)
chr5 (56-169)||(544656-544767)
chr5 (52-194)||(8075812-8075954)
chr5 (48-165)||(18004636-18004753)
chr5 (52-192)||(40612640-40612780)
chr5 (60-166)||(9537033-9537138)
chr5 (47-194)||(16978989-16979136)
chr5 (73-166)||(32640311-32640404)
chr5 (71-166)||(16611749-16611844)
chr5 (111-166)||(32641733-32641788)
chr5 (113-159)||(14881010-14881056)
chr5 (47-91)||(24900414-24900458)
chr5 (48-160)||(31947050-31947162)
chr5 (74-161)||(19186232-19186319)
chr5 (110-155)||(13483174-13483219)
chr5 (47-120)||(13651173-13651245)
chr5 (111-155)||(4594118-4594161)
[»] chr1 (24 HSPs)
chr1 (47-166)||(7945561-7945680)
chr1 (47-194)||(9339643-9339790)
chr1 (52-194)||(32665749-32665891)
chr1 (52-192)||(10332988-10333128)
chr1 (52-166)||(6612421-6612535)
chr1 (47-162)||(11060795-11060910)
chr1 (66-163)||(7944171-7944268)
chr1 (47-160)||(52440572-52440685)
chr1 (52-194)||(52439481-52439619)
chr1 (77-160)||(5783122-5783205)
chr1 (52-166)||(5782416-5782530)
chr1 (47-160)||(10333199-10333312)
chr1 (47-166)||(9341032-9341151)
chr1 (47-160)||(22856677-22856790)
chr1 (111-161)||(6613991-6614041)
chr1 (47-166)||(32664510-32664620)
chr1 (48-160)||(8975157-8975269)
chr1 (52-169)||(34088473-34088582)
chr1 (52-157)||(534574-534678)
chr1 (111-159)||(25037939-25037987)
chr1 (111-159)||(25043151-25043199)
chr1 (111-158)||(3117710-3117757)
chr1 (111-161)||(50107215-50107265)
chr1 (60-160)||(1001164-1001264)
[»] chr4 (19 HSPs)
chr4 (52-166)||(47878491-47878605)
chr4 (47-160)||(53771062-53771175)
chr4 (47-161)||(47874561-47874675)
chr4 (52-194)||(42278051-42278193)
chr4 (52-156)||(31844724-31844828)
chr4 (53-161)||(26172954-26173062)
chr4 (47-166)||(39868919-39869036)
chr4 (48-160)||(53770331-53770443)
chr4 (52-157)||(54574427-54574532)
chr4 (47-169)||(4703221-4703343)
chr4 (52-166)||(48740027-48740141)
chr4 (66-169)||(26685426-26685524)
chr4 (110-194)||(50694809-50694893)
chr4 (111-165)||(4701826-4701880)
chr4 (111-161)||(26170701-26170751)
chr4 (111-160)||(19050299-19050348)
chr4 (111-165)||(21621884-21621938)
chr4 (47-162)||(42391897-42392014)
chr4 (111-156)||(54574822-54574867)
[»] scaffold0034 (1 HSPs)
scaffold0034 (52-165)||(116057-116170)
[»] chr6 (6 HSPs)
chr6 (47-165)||(31218952-31219070)
chr6 (47-160)||(30747996-30748109)
chr6 (52-166)||(31219167-31219281)
chr6 (52-164)||(23507951-23508062)
chr6 (48-169)||(12676474-12676595)
chr6 (47-99)||(33987191-33987243)
[»] scaffold0039 (3 HSPs)
scaffold0039 (52-160)||(79075-79183)
scaffold0039 (53-155)||(74331-74433)
scaffold0039 (47-160)||(79696-79809)
[»] scaffold0767 (2 HSPs)
scaffold0767 (107-160)||(5656-5709)
scaffold0767 (66-159)||(6264-6357)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 10899245 - 10899052
Alignment:
Q  1 aactatatatgttcctaaaaagaaatacaagtaataattnnnnnnntgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtcc 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||| || |||||||||||||||||||||||||||||||| |||| |||    
T  10899245 aactatatatgttcctaaaaagaaatacaagtaataattaaaaaaatgagtaaattgttactttggtccctgactctgcacctcgctgtcacatagatcc 10899146  T
Q  101 atggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
     || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||    
T  10899145 ttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 48646047 - 48646159
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||| |||||||||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  148 tatcactttagtc 160  Q
    |||||||||||||    
T  48646147 tatcactttagtc 48646159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||| |||||||| |  | ||| |||||||||||||||||| ||||||||||||||| |    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  147 ttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||||||||||| ||       ||||||||||||||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 44333141 - 44333243
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || | ||  |||||||||||||||||| ||||||||||||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  152 act 154  Q
    |||    
T  44333241 act 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 35727696 - 35727810
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||| || | ||| |||||||| ||||||||| |||||||||||| ||||    
T  35727696 tgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccg 35727795  T
Q  147 ttatcactttagtcc 161  Q
    |||||||||||||||    
T  35727796 ttatcactttagtcc 35727810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 48788793 - 48788679
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||| ||| ||||| ||||||||||||||| |||||||| || | || ||||||||| ||||||||| ||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatc 48788694  T
Q  152 actttagtccctgac 166  Q
    ||||||||| |||||    
T  48788693 actttagtctctgac 48788679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 43457459 - 43457601
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| |||||| |||||||||  |||||||| || | ||| |||||||||||||||||||| ||||||||||||||||||||    
T  43457459 aaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatc 43457558  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||| | |||| ||       ||||||||||||||||||    
T  43457559 actttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 44334575 - 44334453
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| || ||||| |||||| |||||||| | |||||||| || | ||  |||||||| ||||||||||||||||||||||||||     
T  44334575 tgagcaaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttcca 44334476  T
Q  147 ttatcactttagtccctgacatt 169  Q
    |||||||||||||||||||||||    
T  44334475 ttatcactttagtccctgacatt 44334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 48777253 - 48777372
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| ||| |||| |||||| |||||||||| ||| |||| || | ||  ||||||||||||||| ||||||||||||||||||||    
T  48777253 tgagcaaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccg 48777352  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||| ||||    
T  48777353 ttatcactttagtccatgac 48777372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 35729207 - 35729065
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||  ||||||| | |||| |||||||||| |||||||| || |  || |||| ||||||||||||| ||||||||||||||||| ||||    
T  35729207 aaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttccgctatc 35729108  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||| ||||||||||||||       ||||||||||||||||||    
T  35729107 actgtagtccctgacattaaataaatctgttaagtgatgatgt 35729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 45583686 - 45583792
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| ||||||  ||||| ||| |||||||| || | |||||||||||||| |||||| ||||| |||||||||||||||||    
T  45583686 aaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccgttatc 45583785  T
Q  152 actttag 158  Q
    |||||||    
T  45583786 actttag 45583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 7259809 - 7259663
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||||||||||||  || |||| | || | |||||||||| || ||||  ||   ||| ||||||||||||||||||||||||||| |||||||||    
T  7259809 gagtaaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgt 7259710  T
Q  148 tatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||||||||| ||       ||||||||||||||||||    
T  7259709 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 46286505 - 46286610
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||||||| || |||||||| | | |||||| || | ||| |||||||||||||||||| ||||||||||||||| ||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttatc 46286604  T
Q  152 acttta 157  Q
    ||||||    
T  46286605 acttta 46286610  T

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Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 42477378 - 42477496
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||| ||| |||||||| ||||||||||||||| ||||  |||||||  || | ||| ||||||||||||||||| ||||||||||||||||||    
T  42477378 tgagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagt-cctgactctgcacttccg 42477476  T
Q  147 ttatcactttagtccctgac 166  Q
    |||||| |||| ||||||||    
T  42477477 ttatcattttaatccctgac 42477496  T

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Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 48647564 - 48647424
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| | |||||| ||| || |||||| ||| |||||||| || | ||| |||||||||||||||||| || |||||||||||  ||||||    
T  48647564 aaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgttatc 48647465  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgat 192  Q
    ||||||||||||||| ||       ||||||||||||||||    
T  48647464 actttagtccctgacgttaaaaaaatctgttaagtgatgat 48647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 8374930 - 8375024
Alignment:
Q  66 gtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||||||||||||||||||||| |||||||  || | |||||||||||||||| ||||  |||| | ||||||||||||||||||||||||    
T  8374930 gtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttagtc 8375024  T

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Target: chr7; HSP #17
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 13578414 - 13578332
Alignment:
Q  79 cacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 161  Q
    ||||||||||||||| || ||  || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13578414 cacctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttagtcc 13578332  T

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Target: chr7; HSP #18
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 30925129 - 30925015
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||  ||||||| |||||| ||| | |||| |||||||| || | ||| |||||||||||||||||| |||||| ||||||||||||||     
T  30925129 aaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttatt 30925030  T
Q  152 actttagtccctgac 166  Q
    ||||||||| |||||    
T  30925029 actttagtctctgac 30925015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 12223825 - 12223707
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| ||||||||| |||||| ||  ||||| |||||||| || | ||| |||||||| ||| ||||||||||||||||| |||||    
T  12223825 tgagaaaatggtcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccg 12223726  T
Q  147 ttatcactttagtccctga 165  Q
    |||| ||||||||| ||||    
T  12223725 ttattactttagtcactga 12223707  T

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Target: chr7; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 39708107 - 39708214
Alignment:
Q  54 atagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcac 153  Q
    ||||||||||| ||| ||||||||| ||||||| |||| | ||||||||| | ||  ||| |||||||| ||||| | |||| |||||||||||||||||    
T  39708107 atagtcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcac 39708206  T
Q  154 tttagtcc 161  Q
    ||||||||    
T  39708207 tttagtcc 39708214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 45584558 - 45584475
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||    
T  45584558 attaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 8375703 - 8375595
Alignment:
Q  53 aatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatca 152  Q
    ||||||||| || ||||||||||  ||||| | |||||| |||||||| || | ||  |||||||||||| ||||  |||||||||||||||||||||||    
T  8375703 aatagtcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatca 8375604  T
Q  153 ctttagtcc 161  Q
     ||||||||    
T  8375603 atttagtcc 8375595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 21062814 - 21062917
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||| |||||| || | ||| |||||||||| | ||||||  | |||||||| ||||    
T  21062814 tgagaaaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcctcggctctgcacctccg 21062913  T
Q  147 ttat 150  Q
    ||||    
T  21062914 ttat 21062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 8048910 - 8048800
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||   | ||||||||||||||||||| || | |||||  || | ||  |||||||||||| ||||| | |||||||||||||||    
T  8048910 tgagcaaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccg 8048811  T
Q  147 ttatcacttta 157  Q
    |||||||||||    
T  8048810 ttatcacttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 44530673 - 44530624
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  44530673 attaaatataaataagtctctgactctgcacttccgttatcactttagtc 44530624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 33607685 - 33607630
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||| ||||| |||| |||||||||||||||||| ||||| |||||||    
T  33607685 attaaatacaaagaagtctctgattctgcacttccgttatcattttagaccctgac 33607630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 44529089 - 44529144
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||||||||| | |||||  |||||| |||||||||||||||||||||    
T  44529089 attaaatacaaataagtctccgactcaacacttctgttatcactttagtccctgac 44529144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 5930174 - 5930112
Alignment:
Q  132 gactctgcacttccgttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||| |||||||||||||||||||||||||||| ||||       ||||||||||||||||||    
T  5930174 gactgtgcacttccgttatcactttagtccctgccattaaataattctgttaagtgatgatgt 5930112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 2677911 - 2677796
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||| ||||| ||||||  |||||||| |||||| ||||| | ||||| ||| | ||  ||||||||||||  | ||||| | | ||||||| |||    
T  2677911 gagtaaatggtcaccttggtctttgactctgtacctcgttgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgt 2677812  T
Q  148 tatcactttagtccct 163  Q
    ||||| ||||||||||    
T  2677811 tatcagtttagtccct 2677796  T

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Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 24844588 - 24844683
Alignment:
Q  65 ggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||| ||||||||||||||||||||||   ||||||||  | ||| ||||||||||||  ||||  ||| | ||||||||| |||||| |||||||    
T  24844588 ggtctctgactctgcacctcgctgtcaccaaggtccataactcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 34704910 - 34705009
Alignment:
Q  51 taaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttat 150  Q
    |||||||||||||| ||| | |||||||||||||| ||||| | ||| |  || | ||| |||||||||||| ||||| |||||| || |||| ||||||    
T  34704910 taaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctgactgtgtactttcgttat 34705009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 34888985 - 34888930
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||| ||| | |||| | ||||||||||||||||||||||||||||| ||||    
T  34888985 attaaatataaagatgtccttaactctgcacttccgttatcactttagtccttgac 34888930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 43461789 - 43461735
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||||||||   ||||| |||||||||||||||||||||||| |||||    
T  43461789 attaaatacaaataagttt-tgactatgcacttccgttatcactttagtctctgac 43461735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 385737 - 385684
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtcc 100  Q
    ||||||||| ||||||||||||| |||||||||| |||| ||||| | ||||||    
T  385737 tgagtaaatggtcactttggtccttgactctgcatctcgttgtcacagaggtcc 385684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 12220084 - 12220133
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||| ||| ||||| ||||||||||||||| | |||||||||||||    
T  12220084 attaaatagaaagaagtctctgactctgcacttctgatatcactttagtc 12220133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 32793232 - 32793281
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    ||||||||||||||||||  ||| |||||| ||| |||||||||||||||    
T  32793232 attaaatacaaataagtcattgattctgcatttcggttatcactttagtc 32793281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 21561920 - 21561876
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    |||| |||| |||||||| |||||||||||||||| |||||||||    
T  21561920 tgagcaaatggtcactttagtccctgactctgcacatcgctgtca 21561876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 24844544 - 24844576
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctc 84  Q
    |||| ||||||||||||||||||||||||||||    
T  24844544 aaatggtcactttggtccctgactctgcacctc 24844576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 24934801 - 24934845
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    ||||||||| ||||||||||||||| ||||||||  |||||||||    
T  24934801 tgagtaaatggtcactttggtccctaactctgcatatcgctgtca 24934845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 32766365 - 32766246
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||| ||||||||||||||||||||||||||||||||||||    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||| ||||    
T  32766265 ttatcactttagtccttgac 32766246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 31091648 - 31091534
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  152 actttagtccctgac 166  Q
    ||||||||| |||||    
T  31091548 actttagtctctgac 31091534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 32764935 - 32765054
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||||||||||||||||| |||||||| |||||| || | |||||||||||||  || | ||| ||||||||||||||||||||||||||||||||||||    
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||| ||||||||    
T  32765035 ttatcactttaatccctgac 32765054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 24459563 - 24459450
Alignment:
Q  56 agtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactt 155  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||   ||| |||||||||||||||||| ||||| |||||||||  |||||||||    
T  24459563 agtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcactt 24459464  T
Q  156 tagtccctgacatt 169  Q
    ||||||||||||||    
T  24459463 tagtccctgacatt 24459450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 31090166 - 31090280
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||| ||| |||||||| |||||| |||||||||| |||||||| || | ||| |||||||| ||||||||| |||||||||||||||||||||     
T  31090166 aaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttatg 31090265  T
Q  152 actttagtccctgac 166  Q
    | |||||||||||||    
T  31090266 attttagtccctgac 31090280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 34037793 - 34037687
Alignment:
Q  53 aatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatca 152  Q
    |||||||||||| |||| ||||||||||||| ||||||||| ||||||||  | ||| ||||||||||||||||||  |||||||||||||| |||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatca 34037694  T
Q  153 ctttagt 159  Q
    |||||||    
T  34037693 ctttagt 34037687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 17330351 - 17330209
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||| |||| |||| ||| |||||| ||| |||||| |||||||| || | ||| |||||||||||||||||| ||||||||||| ||||||||||    
T  17330351 aaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatc 17330252  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||| |||| ||       ||||||||||||||||||    
T  17330251 actttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 5915118 - 5915003
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| |||| ||||||||||||||||| ||| |||||||  || | |||||||||||||||| ||||| || ||||||||||||||    
T  5915118 tgagcaaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccg 5915019  T
Q  147 ttatcactttagtccc 162  Q
    ||||||| ||| ||||    
T  5915018 ttatcaccttaatccc 5915003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 40000455 - 40000315
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||| ||||||||||||||||||||||||||||||||| | |||| ||| ||    || |||||||||||||||||| || || ||||||||||||||||    
T  40000455 aaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatc 40000356  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgat 192  Q
    |||||| |||||||| ||       ||||||||||||||||    
T  40000355 actttattccctgacgttaagaaaatctgttaagtgatgat 40000315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 194
Target Start/End: Original strand, 2910098 - 2910244
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    ||||||||| ||||||| |||  ||| | |||| |||||||||| |||| ||| || | | | |||||||||||||||||| |||||||||||||||| |    
T  2910098 gagtaaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctt 2910197  T
Q  148 tatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    | ||||||||||||||||| ||       ||||||||||||||||||    
T  2910198 tgtcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 14704049 - 14704122
Alignment:
Q  93 ataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||| || | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14704049 ataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgac 14704122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 24458057 - 24458170
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| |||||||| | |||| |||||| ||| |||||||| || | || ||||||||||||||||||  |||||||| ||||| ||    
T  24458057 tgagcaaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcg 24458156  T
Q  147 ttatcactttagtc 160  Q
    ||||||||||||||    
T  24458157 ttatcactttagtc 24458170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 2911617 - 2911505
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||||||| |||  |||||| |||||||||| ||| | ||||| | || | ||||||| ||||||||| |||||| ||||||||||    
T  2911617 tgagcaaatagtcactttggtctctggttctgcagctcgctgtcacataaggccatgactcaaagttaaatataaataagtctctgactttgcacttccg 2911518  T
Q  147 ttatcactttagt 159  Q
    |||||||||||||    
T  2911517 ttatcactttagt 2911505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 7073700 - 7073783
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||       ||||||||||||||||||    
T  7073700 attaaatacaaataagtctctgattctgcacttccgttatcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 17466930 - 17466841
Alignment:
Q  71 tgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    ||||||||||||||||||||| ||| | |  || | ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17466930 tgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtc 17466841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 34582794 - 34582677
Alignment:
Q  49 agtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgtt 148  Q
    ||||||| ||||| || |||||||||||||||||| ||||| | | |||||  || | | | ||||||||||||  ||||||||| | ||||||||||||    
T  34582794 agtaaatggtcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgtt 34582695  T
Q  149 atcactttagtccctgac 166  Q
    ||||||||||||||||||    
T  34582694 atcactttagtccctgac 34582677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 39015002 - 39015114
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| || |||| ||| || | ||| |||||||||||||| |||  ||||||||||||| |     
T  39015002 tgagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcactttca 39015101  T
Q  147 ttatcactttagt 159  Q
    |||||| ||||||    
T  39015102 ttatcattttagt 39015114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 12746327 - 12746213
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    ||||||||| ||||||||||| | |||||||||||||||| ||| || |||| | || | ||| ||||||||||||  ||| ||||| | ||| ||||||    
T  12746327 tgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttccg 12746228  T
Q  147 ttatcactttagtcc 161  Q
    |||||||||||||||    
T  12746227 ttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 31814463 - 31814323
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||  | |||||||||||||||||  || |||||  || | |||||||||||| ||| ||||   |||||||||||||||||||||    
T  31814463 aaatagtcactttagtcatttactctgcacctcgctgt--taaaggtctctgactcagaattaaatataaagaagtttttgactctgcacttccgttatc 31814366  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||  ||||       ||||||||||||||||||    
T  31814365 actttagtccctagcattaaataattctgttaagtgatgatgt 31814323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 38985053 - 38985002
Alignment:
Q  109 gaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  38985053 gaattaaatacaaagaagtccttgactctgcacttccgttatcactttagtc 38985002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 38853753 - 38853871
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||  ||||||||||||||||||||| ||| ||  ||||||| |||||  || | ||| ||||||||||||  ||||||| | | |||||||||||    
T  38853753 gagtaaacggtcactttggtccctgactctacacttcattgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgt 38853852  T
Q  148 tatcactttagtccctgac 166  Q
    ||||| ||||||| |||||    
T  38853853 tatcaatttagtcactgac 38853871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 38854787 - 38854904
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||| |||||  || | ||| ||||||||||||  ||| ||| | | |||||||  ||    
T  38854787 gagtaaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaagtagttcctaaatgtgcacttatgt 38854886  T
Q  148 tatcactttagtccctga 165  Q
    ||||| ||||||| ||||    
T  38854887 tatcaatttagtcactga 38854904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 21733833 - 21733785
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  21733833 attaaatacaaataagtctctgactctgcacttccgtcatcactttagt 21733785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 14705168 - 14705122
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggt 98  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  14705168 aaatagtcactttggtcccggactctgcacctcgctgtcacataggt 14705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||| | | |||| ||   ||  ||||||||||||  ||||||||| | |||||||| |    
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  147 ttatcactttagtc 160  Q
    |||||| |||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 39016507 - 39016390
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccat--ggcccagaattaaatacaaataagtccctgactctgcacttc 144  Q
    |||| ||||||||||||| ||| |||| |||||| |||||||||| |||  ||  |  | | ||| ||||||||||||||||||    ||||||||||||    
T  39016507 tgagcaaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc----actctgcacttc 39016412  T
Q  145 cgttatcactttagtccctgac 166  Q
    |||||||||||||||| |||||    
T  39016411 cgttatcactttagtctctgac 39016390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 5914324 - 5914412
Alignment:
Q  70 ctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttag 158  Q
    |||||| ||||||||| ||| |||||||||  || | || ||||||||||||| |||||  ||||| |||||| |||||||||||||||    
T  5914324 ctgactttgcacctcgttgtgatataggtctctgactcacaattaaatacaaagaagtcagtgactttgcactcccgttatcactttag 5914412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 9616160 - 9616048
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||||||||||||||||| ||||||| ||||  ||||| ||| |||| | |  | || |||||||||||||  ||||||||| |  |||||| |||    
T  9616160 gagtaaatagtcactttggtccttgactctacaccctgctgttataaaggttcctaactcataattaaatacaaagtagtccctgaatgcgcactttcgt 9616061  T
Q  148 tatcactttagtc 160  Q
    ||||| |||||||    
T  9616060 tatcaatttagtc 9616048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 17466102 - 17466157
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||| |  || ||||||||||||||||||| |||||||||||||||||    
T  17466102 attaaatacaaagatatctctgactctgcacttccgttttcactttagtccctgac 17466157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 14887624 - 14887580
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||    
T  14887624 tgagtaaatggtcactttggtcccaaactctgcacctcgctgtca 14887580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 7412153 - 7412211
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacatt 169  Q
    |||||||| ||| ||||| ||||   ||||||||||||||||||||||||||| |||||    
T  7412153 attaaatataaagaagtcactgatagtgcacttccgttatcactttagtccctaacatt 7412211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 37607189 - 37607218
Alignment:
Q  137 tgcacttccgttatcactttagtccctgac 166  Q
    ||||||||||||||||||||||||||||||    
T  37607189 tgcacttccgttatcactttagtccctgac 37607218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 11985688 - 11985804
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    ||||||||| |||  |||| ||||||||||  ||||||||||| ||| |||||  || | ||| ||||||||||||  |||| ||||   |||| || ||    
T  11985688 tgagtaaattgtcgttttgatccctgactccacacctcgctgttataaaggtctctgactcaggattaaatacaaagtagtctctgaaggtgcattttcg 11985787  T
Q  147 ttatcactttagtccct 163  Q
    |||||| ||||||||||    
T  11985788 ttatcagtttagtccct 11985804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 35178925 - 35178811
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||| || | ||| ||||||||||||||||||||||| |||||||||||||||||    
T  35178925 aaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatc 35178826  T
Q  152 actttagtccctgac 166  Q
    |||||||||||||||    
T  35178825 actttagtccctgac 35178811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 32898571 - 32898424
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| ||||||||||||||| ||| |||||| |||||||| || |  || ||||||||||||||||||||||||||||||||||||    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  147 ttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||||||||||| ||       ||||||||||||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 35177392 - 35177539
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||| ||| |||||| | |||||| |||||||||| |||||||| || | | | ||||||||||||||||||||||||||||||||||||    
T  35177392 tgagcaaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccg 35177491  T
Q  147 ttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||||||||||| ||       ||||||||||||||||||    
T  35177492 ttatcactttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 1953094 - 1952949
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    ||||||||||||||||| |||||||| |||||| |||| |||||||||| ||  || |  || |||| |||||||||||||  |||||||| ||||||||    
T  1953094 gagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtctatgactctgtacttccgt 1952996  T
Q  148 tatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||| ||||| ||       ||||||||||||||||||    
T  1952995 tatcactttagtctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 10407705 - 10407563
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| ||| |||| |||||| ||| |||||| |||||||  || |  || |||||| |||||||||||| | ||| |||||||||||||||    
T  10407705 aaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgttatc 10407606  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||| |||||| ||       ||||||||||||||||||    
T  10407605 actttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 45476181 - 45476272
Alignment:
Q  69 cctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    ||||| ||| || |||||||| | | |||||||||   |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45476181 cctgattcttcatctcgctgttagaaaggtccatgattcagaattaaatacaaataagtctctgactctgcacttctgttatcactttagtc 45476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 41754000 - 41754097
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgtta 149  Q
    ||||||||||||| |||||||  ||||||||| ||||||| |||||||| || | ||| |||||||| ||| |||||||||||||| ||||| |||||    
T  41754000 aaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactctacactttcgtta 41754097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 41754915 - 41754810
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||  ||| ||| ||||||||||||||||| |||| ||  || | ||| |||||||||||| |||| ||||||||| ||||||||||||     
T  41754915 aaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccgttatt 41754817  T
Q  152 actttag 158  Q
    |||||||    
T  41754816 actttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 5965504 - 5965449
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||| |||||    
T  5965504 attaaatacaaagaagtctttgactctgcacttccgttatcactttagtctctgac 5965449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 31075414 - 31075297
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||| |||| ||||||| |||||||||||||||| ||| | | |||| | |||| ||| ||||||||||||  ||| ||||| | || ||| ||||    
T  31075414 gagtaaatggtcaatttggtctctgactctgcacctcgttgttacaaaggttcttggctcagcattaaatacaaaatagt-cctgaatatgtactcccgt 31075316  T
Q  148 tatcactttagtccctgac 166  Q
    ||||||||||||| |||||    
T  31075315 tatcactttagtcactgac 31075297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 43539926 - 43539881
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcat 92  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  43539926 tgagtaaatagacactttggtccctgactttgcacctcgctgtcat 43539881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 43539102 - 43539146
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||    
T  43539102 tgagtaaatagtcactttggtccctaactttgcacctcgctgtca 43539146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 5738145 - 5738036
Alignment:
Q  51 taaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttat 150  Q
    ||||| |||||||| || ||||||| ||||  ||| ||| | ||||||||||| | ||  |||||||||||| ||||   |||||||| |||||||||||    
T  5738145 taaatggtcactttagttcctgactttgcatatcgttgtgacataggtccatgactcaagattaaatacaaagaagttattgactctgtacttccgttat 5738046  T
Q  151 cactttagtc 160  Q
    ||||| ||||    
T  5738045 cacttcagtc 5738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 59549 - 59593
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    |||||||||||||||||| |||||||||| | |||||||||||||    
T  59549 tgagtaaatagtcactttagtccctgactttacacctcgctgtca 59593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 5736899 - 5736955
Alignment:
Q  107 cagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccct 163  Q
    |||||||||||||||| || || || ||||| ||||| |||||||||||||||||||    
T  5736899 cagaattaaatacaaagaaatctctaactctacactttcgttatcactttagtccct 5736955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 10406269 - 10406320
Alignment:
Q  113 taaatacaaataagtccctgactctgcacttccgttatcactttagtccctg 164  Q
    |||||| ||| ||||| |||||||||||||||  ||||||||||||||||||    
T  10406269 taaataaaaacaagtctctgactctgcacttctattatcactttagtccctg 10406320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 9626584 - 9626474
Alignment:
Q  49 agtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgtt 148  Q
    ||||||| ||||||||||||||| ||| | ||| ||||||||||| | |||  || | |||||||||||||||   ||||  ||| | ||| ||||||||    
T  9626584 agtaaatggtcactttggtccctaactatacacttcgctgtcataaatgtcattgactcagaattaaatacaatgtagtcattgaatatgcgcttccgtt 9626485  T
Q  149 atcactttagt 159  Q
    || ||||||||    
T  9626484 attactttagt 9626474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 12637816 - 12637762
Alignment:
Q  115 aatacaaataagtccctgactctgcacttccgttatcactttagtccctgacatt 169  Q
    ||||||||  ||| ||||| | |||||||||||||||||||||||||| ||||||    
T  12637816 aatacaaagtagttcctgaatgtgcacttccgttatcactttagtccccgacatt 12637762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 28619607 - 28619549
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacatt 169  Q
    |||||||||||| | |||  ||||||||||||||  |||||||||||||| ||||||||    
T  28619607 attaaatacaaagaggtcattgactctgcacttctattatcactttagtctctgacatt 28619549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 28619050 - 28619099
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||||||| || ||  ||||||||||||| ||||||||||||||||    
T  28619050 attaaatacaaagaaatcattgactctgcactttcgttatcactttagtc 28619099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 36032704 - 36032749
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcata 93  Q
    |||||||| ||||||||| || |||||||||||| |||||||||||    
T  36032704 gagtaaattgtcactttgatctctgactctgcacatcgctgtcata 36032749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 45476616 - 45476576
Alignment:
Q  120 aaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  45476616 aaataagtcgctgactctgcacttctcttatcactttagtc 45476576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 17702045 - 17701926
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||||||||||||||||| ||| |||| |||||| ||||||||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||||    
T  17702045 tgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccg 17701946  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||||||||    
T  17701945 ttatcactttagtccctgac 17701926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 17700520 - 17700634
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||  ||||||||||||||| ||||| |||||| | || | ||| |||||||||||||||||||||||||||||||||||||||||    
T  17700520 aaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 17700619  T
Q  152 actttagtccctgac 166  Q
    |||||||||||||||    
T  17700620 actttagtccctgac 17700634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 48572987 - 48573101
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||||| || | ||| |||||||||||||||| | ||||||||||||||||||||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatc 48573086  T
Q  152 actttagtccctgac 166  Q
    |||||||||| ||||    
T  48573087 actttagtccttgac 48573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 55389590 - 55389480
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||  || | || |||||||||||| ||||||||||||||| |||||||||||||    
T  55389590 aaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttatc 55389491  T
Q  152 actttagtccc 162  Q
    |||||||||||    
T  55389490 actttagtccc 55389480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||| |||| ||| || | ||| |||||||||||||||||||||||||||||||||| |    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  147 ttatcactttagtccctgacattnnnnnnntctgttaagtgatgatg 193  Q
     ||| ||||||||||||||| ||       |||||||||||||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 55388070 - 55388189
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| |||||||| |||||| ||||||||||||||||||  || | ||| |||||||||||||||||  ||||||||||||| |||    
T  55388070 tgagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccg 55388169  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||||||||    
T  55388170 ttatcactttagtccctgac 55388189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 34263807 - 34263924
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||| ||   ||| |||||||||||||||||| |||||||| ||||||| |||||    
T  34263807 aaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatc 34263906  T
Q  152 actttagtccctgacatt 169  Q
    |||||| |||||||||||    
T  34263907 actttaatccctgacatt 34263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 2592133 - 2592013
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| |||||| | |||||| |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||   |||||||    
T  2592133 tgagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccg 2592034  T
Q  147 ttatcactttagtccctgaca 167  Q
    |||||||||||||||||||||    
T  2592033 ttatcactttagtccctgaca 2592013  T

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Target: chr3; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 33428561 - 33428447
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| |||||||||||||||||||| ||||| |||||||| || | |||||||||||||||| |||||| |||||||||| |||||    
T  33428561 tgagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccg 33428462  T
Q  147 ttatcactttagtcc 161  Q
    || ||||||||||||    
T  33428461 ttgtcactttagtcc 33428447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 47118177 - 47118058
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| |||||||||||||||||||| ||||||||| ||||  | | ||| ||||||| |||| ||||| |||||||||||||| ||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcg 47118078  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||||||||    
T  47118077 ttatcactttagtccctgac 47118058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 2591629 - 2591742
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| |||||| || ||||||| |||||||| || | ||| |||||||||||| ||||| |||||||||||||||| | |||    
T  2591629 aaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatc 2591728  T
Q  152 actttagtccctga 165  Q
    ||||||||||||||    
T  2591729 actttagtccctga 2591742  T

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Target: chr3; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 20464078 - 20464180
Alignment:
Q  59 cactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttag 158  Q
    |||||| ||||| |||||||||||||| ||||| | |||||| |||| ||  |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttag 20464177  T
Q  159 tcc 161  Q
    |||    
T  20464178 tcc 20464180  T

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Target: chr3; HSP #13
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 36278954 - 36279068
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| | | || |||| ||||| |||||||| ||   ||| |||||||||||||||||| ||||||||||||||||||||||    
T  36278954 aaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatc 36279053  T
Q  152 actttagtccctgac 166  Q
    | |||||||||||||    
T  36279054 attttagtccctgac 36279068  T

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Target: chr3; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 45601059 - 45600951
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||| |||||||| |||||||||||||  ||||||||||| |||||||| ||   ||| |||||||||||| |||| |||||||||||||||||||||||    
T  45601059 aaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcacttccgttatc 45600961  T
Q  152 actttagtcc 161  Q
    ||||||||||    
T  45600960 actttagtcc 45600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 11773142 - 11773060
Alignment:
Q  82 ctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctg 164  Q
    |||||||||| |||||||| || | ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagtccctg 11773060  T

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Target: chr3; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 52316981 - 52317123
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||| ||||||| ||| |||| |||||| ||||||||||||||||||  || | ||  ||||||||||||||||||  | ||||||||| |||||||||    
T  52316981 aaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccgttatc 52317080  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    | |||||||| |||| ||       ||||||||||||||||||    
T  52317081 attttagtccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 48574538 - 48574466
Alignment:
Q  94 taggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    ||||||| || | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  48574538 taggtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttagtccttgac 48574466  T

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Target: chr3; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 48808382 - 48808478
Alignment:
Q  66 gtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccc 162  Q
    |||||||| |||||| |||||||| | |||||||  || | ||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||||    
T  48808382 gtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttgtcactttagtccc 48808478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 50753820 - 50753961
Alignment:
Q  53 aatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatca 152  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||||| |    ||| |||||||| ||| ||||  |||||||| |||||| |||||||    
T  50753820 aatagtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactctacacttctgttatca 50753919  T
Q  153 ctttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||| | ||       ||||||||||||||||||    
T  50753920 ctttagtccctgccgttaaaaaaatctgttaagtgatgatgt 50753961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 19115267 - 19115157
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| || | ||||||||||||||| ||||| |||||||| |  | ||| |||||||||||| |||| | |||||||||||||||||| |     
T  19115267 aaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagt-catgactctgcacttccgttttt 19115169  T
Q  152 actttagtccct 163  Q
    ||||||||||||    
T  19115168 actttagtccct 19115157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 36280379 - 36280324
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  36280379 attaaatataaataagtctctgactctgcacttccgttatcactttagtccctgac 36280324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 47075477 - 47075358
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| ||||||||  ||| ||||||||||||||| ||||| |||||||| |  | ||  |||||||||||| ||  |||||||||| ||||||||    
T  47075477 tgagcaaatggtcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttccg 47075378  T
Q  147 ttatcactttagtccctgac 166  Q
    |||||||||||||| |||||    
T  47075377 ttatcactttagtctctgac 47075358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 19114541 - 19114643
Alignment:
Q  58 tcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcacttta 157  Q
    ||||||| |||||||||||||||| ||| ||||| | |||||| || | ||  |||||||||||| ||||| || ||| |||||||||||||||||||||    
T  19114541 tcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcacttta 19114640  T
Q  158 gtc 160  Q
    |||    
T  19114641 gtc 19114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 53959162 - 53959107
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  53959162 attaaatacaaataagttcatgactctgcacttccgttatcactttagtctctgac 53959107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 3671043 - 3671152
Alignment:
Q  54 atagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcac 153  Q
    |||||||||||  ||| ||||| |||||||| || ||| | |||||  || | ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  3671043 atagtcacttta-tccttgactttgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgttatcac 3671141  T
Q  154 tttagtccctg 164  Q
    |||| ||||||    
T  3671142 tttaatccctg 3671152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 47427887 - 47427959
Alignment:
Q  77 tgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgtta 149  Q
    ||||||||||||||| |||||||| || | || ||||||||||||| |||||||||||| ||||||| |||||    
T  47427887 tgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 19331117 - 19331183
Alignment:
Q  59 cactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataa 125  Q
    |||||| || ||||||||||||||| ||||||| |||||||| || | ||| |||||||||||||||    
T  19331117 cactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 26652730 - 26652686
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||    
T  26652730 tgagtaaatagtcacttgggtccctgactttgcatctcgctgtca 26652686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 48809697 - 48809661
Alignment:
Q  130 ctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||||||||||||||||||||||| ||||    
T  48809697 ctgactctgcacttccgttatcactttagtccatgac 48809661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 20464586 - 20464543
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||    
T  20464586 gagtaaatagtcactttagtccttgactctgcaccttgctgtca 20464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 45598988 - 45599018
Alignment:
Q  133 actctgcacttccgttatcactttagtccct 163  Q
    |||||||||||||||||||||||||||||||    
T  45598988 actctgcacttccgttatcactttagtccct 45599018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 49261620 - 49261544
Alignment:
Q  87 tgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    ||||| |||||||| || | ||| ||||||||||||   ||| || |||||||| ||||||||||||||||||| |||||    
T  49261620 tgtcacataggtccctgactcaggattaaatacaaa---gtctctaactctgcatttccgttatcactttagtctctgac 49261544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 53957677 - 53957769
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttcc 145  Q
    ||||||||||||| || | ||| |||||| |||||||| | |||||| | || | ||| || |||||||||||||||  |||||||||||||||    
T  53957677 aaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcaggat-aaatacaaataagtctatgactctgcacttcc 53957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 33427813 - 33427860
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    ||||||||||||| |  |||||||||||||||| |||||||||||||||    
T  33427813 attaaatacaaattaa-ccctgactctgcactttcgttatcactttagt 33427860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 28591235 - 28591125
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| || | ||| ||||||||||||||| ||||||||||||||||||| |||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatc 28591136  T
Q  152 actttagtccc 162  Q
    |||||||||||    
T  28591135 actttagtccc 28591125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 2464671 - 2464785
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| ||| |||| |||||| |||||||||||||||||||||| | ||  ||||||||||||||||||||| ||||||||||| |||||||    
T  2464671 aaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacgttatc 2464770  T
Q  152 actttagtccctgac 166  Q
    ||||||||| |||||    
T  2464771 actttagtctctgac 2464785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 2466895 - 2466781
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||||  ||   ||| |||||||| |||||||||||| |||||||||||||||||||    
T  2466895 aaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatc 2466796  T
Q  152 actttagtccctgac 166  Q
    |||||||||||||||    
T  2466795 actttagtccctgac 2466781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 8074453 - 8074567
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| | |||| |||||||||| ||| |||| || | ||| |||||||||||||||||||||||||||||||||||||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  152 actttagtccctgac 166  Q
    |||||||| ||||||    
T  8074553 actttagttcctgac 8074567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 4592863 - 4593005
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| | || | |||||||||| ||| |||| || | ||  |||||||||||||||||||||||||||||||||||||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||||| ||       ||||||||||||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 9538170 - 9538057
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| || | ||| |||||||||||| ||||| |||| | |||||||||||||||    
T  9538170 aaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatc 9538071  T
Q  152 actttagtccctga 165  Q
    | ||||||| ||||    
T  9538070 attttagtctctga 9538057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 546161 - 546043
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| ||||| || | |||| |||||||||| |||||||| || | ||| |||||||||| |||||||| ||||||||||||||||    
T  546161 tgagcaaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccg 546063  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||||||||    
T  546062 ttatcactttagtccctgac 546043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 25590428 - 25590546
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||| |  |||||||||||||||||||||| |||||||| || | | || ||||||||||||||||| |||| |||||||||| |    
T  25590428 tgagcaaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactcgga-ttaaatacaaataagtctctgattctgcacttctg 25590526  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||| || |||||    
T  25590527 ttatcactttaatctctgac 25590546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 19182971 - 19183061
Alignment:
Q  71 tgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 161  Q
    ||||| ||||||||||||||| |||||||  || | ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  19182971 tgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttagtcc 19183061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 21069286 - 21069396
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| ||| |||||||||||||||| ||||| | |||||  || | ||| ||||||||||||||||||| |||||||||||||| |    
T  21069286 tgagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctg 21069385  T
Q  147 ttatcacttta 157  Q
    || ||||||||    
T  21069386 ttttcacttta 21069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 18400188 - 18400284
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttc 144  Q
    |||||||| |||||||| ||||||||||||||||||| |||||| |||||||| || | ||| |||||||| ||| ||||| |||||||||||||||    
T  18400188 gagtaaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcacttc 18400284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 14891269 - 14891154
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| |||||||  || | ||  ||||||| |    ||||| |||||||| ||||||||    
T  14891269 tgagcaaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaatgc----aagtctctgactctacacttccg 14891174  T
Q  147 ttatcactttagtccctgac 166  Q
    |||||||||||||| |||||    
T  14891173 ttatcactttagtctctgac 14891154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 544656 - 544767
Alignment:
Q  56 agtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactt 155  Q
    |||||||||||||| ||||||||||| ||| ||||| |||||||  || | ||| |||||||||||||||||| ||||||||||||||||||||| | ||    
T  544656 agtcactttggtcc-tgactctgcacttcg-tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcacttccgttataaatt 544753  T
Q  156 tagtccctgacatt 169  Q
    ||||  ||||||||    
T  544754 tagtttctgacatt 544767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 8075954 - 8075812
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||| ||||||||  ||||||||||||||||||| | |||| ||| ||   ||  |||||||||||| ||||  |||| ||||||||| |||||||    
T  8075954 aaatagtcgctttggtcattgactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcactttcgttatc 8075855  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||||| ||       ||||||||||||||||||    
T  8075854 actttagtccctgacgtttaaaaaatctgttaagtgatgatgt 8075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 18004636 - 18004753
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    ||||||||| | ||||| ||||||||||||||||||| |||||| | | ||| || ||  || |||||||||||| | |||  |||||||||||||||||    
T  18004636 gagtaaataattactttagtccctgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccgt 18004735  T
Q  148 tatcactttagtccctga 165  Q
    ||||||||||||| ||||    
T  18004736 tatcactttagtctctga 18004753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 40612780 - 40612640
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| | |||| ||| ||||||  ||||||| || | ||| |||||||||| |||  | |||||||||||||||||||||||    
T  40612780 aaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatacagatattttcctgactctgcacttccgttatc 40612681  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgat 192  Q
    |||||| | |||||| ||       ||||||||||||||||    
T  40612680 actttaattcctgacgttaaaaaaatctgttaagtgatgat 40612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 9537033 - 9537138
Alignment:
Q  60 actttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    ||||| |||||| ||||||||||||||||||| |||||||  || |  ||||||||||||||| |||| | ||||| ||||||||| |||||||||||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagt-catgactgtgcacttccattatcactttagt 9537131  T
Q  160 ccctgac 166  Q
    | |||||    
T  9537132 cactgac 9537138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 16978989 - 16979136
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||||| ||||||||||| |||| ||||| ||||||| |||| || | |||||  || | ||||||||||| ||||||||||||| |||||| |||| ||    
T  16978989 tgagtagatagtcactttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtccctaactctgtacttacg 16979088  T
Q  147 ttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||| ||||||| || || ||       ||||||||||||||||||    
T  16979089 ttatcattttagtctctaacgttaagttattctgttaagtgatgatgt 16979136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 32640311 - 32640404
Alignment:
Q  73 actctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||| |||||| ||||| ||||  | ||| ||||||||||||||||||||| |||||  ||||| ||||||||||||||| |||||    
T  32640311 actctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttagtctctgac 32640404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 16611749 - 16611844
Alignment:
Q  71 tgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    ||||||| ||||||||||||| |||||||  || | ||| |||||||||||| ||| | |||| | |||||||||||||||||||||||| |||||    
T  16611749 tgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtctctgac 16611844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 32641788 - 32641733
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgac 166  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  32641788 attaaatacaaataagttgctgactctgcacttccgttatcactttaatccctgac 32641733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 14881010 - 14881056
Alignment:
Q  113 taaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14881010 taaacacaaataagtccctgactctgcacttccgttatcactttagt 14881056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 24900458 - 24900414
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtca 91  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  24900458 tgagcaaatagtcactttggtccctgactctgcacctcgctgtca 24900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 31947162 - 31947050
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    ||||||||||||||||| ||| |||| ||||||| | | |||||||||| | | |  |  | ||||||||||||| |||||  |||||||  ||||||||    
T  31947162 gagtaaatagtcactttagtctctgattctgcactttgttgtcatatagattccttacttaaaattaaatacaaacaagtctatgactctagacttccgt 31947063  T
Q  148 tatcactttagtc 160  Q
    |||||||||||||    
T  31947062 tatcactttagtc 31947050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 19186319 - 19186232
Alignment:
Q  74 ctctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 161  Q
    ||||||| ||| | |||| |||||||| || |  || |||||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  19186319 ctctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttagtcc 19186232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 13483219 - 13483174
Alignment:
Q  110 aattaaatacaaataagtccctgactctgcacttccgttatcactt 155  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||    
T  13483219 aattaaatacaaacaagtctctgactttgcacttccgttatcactt 13483174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 13651245 - 13651173
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaataca 120  Q
    |||| ||||||||||||| |||| ||||| ||||||| ||||||| |||||||| || | ||| ||||||||||    
T  13651245 tgagcaaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 4594161 - 4594118
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactt 155  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||    
T  4594161 attaaatacaaataagtca-tgactctgcacttccattatcactt 4594118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 7945680 - 7945561
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||| |||||| | || | ||| |||||||||||||||||| |||||| ||||||||||    
T  7945680 tgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccg 7945581  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||||||||    
T  7945580 ttatcactttagtccctgac 7945561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 9339643 - 9339790
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||| |||| |||||||| |||||| |||| ||| | |||||||| || | ||| ||||||||||||||| |||| |||||||||||||||    
T  9339643 tgagcaaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccg 9339742  T
Q  147 ttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||||||||||||||||| ||       ||||||||||||||||||    
T  9339743 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 32665891 - 32665749
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||| |||||| |||||||||| |||||||  || | ||  ||||||||||||||||||  |||||||||||||||||||||    
T  32665891 aaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatc 32665792  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||| | ||       ||||||||||||||||||    
T  32665791 actttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 10332988 - 10333128
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||||| ||||||||| ||||| |||||||| ||   ||| |||||||| |||||||||||| |||||||||||||||||||    
T  10332988 aaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttatc 10333087  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgat 192  Q
    | |||||||| |||| ||       ||||||||||||||||    
T  10333088 attttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 6612421 - 6612535
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||||||||||||||||||||||| ||| | |||  || | ||  |||||||||||| ||||| |||||||||||||||| |||||    
T  6612421 aaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatc 6612520  T
Q  152 actttagtccctgac 166  Q
    |||||| ||||||||    
T  6612521 actttaatccctgac 6612535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 11060910 - 11060795
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    ||||||||| ||||||||| ||| ||||| ||||||||||||||| | ||||||||| | || |||||||||||||  ||||||||| |  |||||| ||    
T  11060910 tgagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcg 11060811  T
Q  147 ttatcactttagtccc 162  Q
    ||||||||||||||||    
T  11060810 ttatcactttagtccc 11060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 7944171 - 7944268
Alignment:
Q  66 gtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccct 163  Q
    |||||||| | |||| |||||||||| |||||||| || | || |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  7944171 gtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttagtccct 7944268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 52440685 - 52440572
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||| |||| |||||| |||||| ||||| ||||||||| |||||||| ||   ||| |||||||| ||||||||| ||||||||||||||||     
T  52440685 tgagcaaataatcacattggtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttcca 52440586  T
Q  147 ttatcactttagtc 160  Q
    ||||||||||||||    
T  52440585 ttatcactttagtc 52440572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 52439481 - 52439619
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| | |||||| |||||| |||||||||| |||||||  |||| ||| |||||||||| |||||||     ||||||| ||||||||||    
T  52439481 aaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtc----tctctgcatttccgttatc 52439576  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||||||||| ||       ||||||||||||||||||    
T  52439577 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 5783205 - 5783122
Alignment:
Q  77 tgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    ||||||||||||||| |||| |||  | | |||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttagtc 5783122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 5782416 - 5782530
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||| |||| ||| |||||||||||||||||||||||||| |||||||  || | ||  |||||||||||| ||||| |||| | ||||||||| |||||    
T  5782416 aaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatc 5782515  T
Q  152 actttagtccctgac 166  Q
    ||||||||| |||||    
T  5782516 actttagtctctgac 5782530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 10333312 - 10333199
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||| |  || |||| |||||| |||||||| | |||||||  || | ||  |||||||||||||||||| |||||||||||||||||    
T  10333312 tgagcaaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccg 10333213  T
Q  147 ttatcactttagtc 160  Q
    ||||||||||||||    
T  10333212 ttatcactttagtc 10333199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 9341151 - 9341032
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||| ||  | | |||||| ||| || ||| |||||||| || | ||| |||||||||||||||||| |||||| |||||||| |    
T  9341151 tgagcaaatagtcactttgatcatttattctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctg 9341052  T
Q  147 ttatcactttagtccctgac 166  Q
    |||||||||||||| |||||    
T  9341051 ttatcactttagtctctgac 9341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 22856677 - 22856790
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| ||| ||||||||||||| || ||| | | || | | || | ||| |||||||||||| ||||| || ||||||||||||||    
T  22856677 tgagcaaatggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccg 22856776  T
Q  147 ttatcactttagtc 160  Q
    ||||||||||||||    
T  22856777 ttatcactttagtc 22856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 6614041 - 6613991
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 161  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  6614041 attaaatacaaataagtctctgactctgcacttcagttatcattttagtcc 6613991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 32664510 - 32664620
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||| ||| |||||| ||| ||||||||||||||||| |||||||| | || | ||| ||||||||||||||        ||||||||||||||    
T  32664510 tgagcaaatactcaatttggttcctcactctgcacctcgctgttatataggt-cttgactcaggattaaatacaaata--------actctgcacttccg 32664600  T
Q  147 ttatcactttagtccctgac 166  Q
    ||||||||||||||| ||||    
T  32664601 ttatcactttagtccttgac 32664620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 8975157 - 8975269
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||| ||||||||||||||| ||| ||||||| | ||||| | |||||| || | ||  |||||||| |||  ||||| ||| | ||||||| |||    
T  8975157 gagtaaatggtcactttggtccctaactttgcaccttgttgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgt 8975256  T
Q  148 tatcactttagtc 160  Q
    |||||||||||||    
T  8975257 tatcactttagtc 8975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 34088582 - 34088473
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||| |||||||| |||||||||||| || |||||||||| | ||||| |||       |||||||||||| ||||| ||||||||||||||||  ||||    
T  34088582 aaattgtcactttagtccctgactctacatctcgctgtcacaaaggtc-atg-------attaaatacaaagaagtctctgactctgcacttccactatc 34088491  T
Q  152 actttagtccctgacatt 169  Q
    |||||| ||| |||||||    
T  34088490 actttaatccttgacatt 34088473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 534678 - 534574
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||| ||| ||  ||| |||||||||||||||| | |||||| | ||   ||| |||||||||||| |||||| ||||||| |||||| ||||||    
T  534678 aaatagtcatttttgtttctggctctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtcc-tgactctacacttctgttatc 534580  T
Q  152 acttta 157  Q
    ||||||    
T  534579 acttta 534574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 25037939 - 25037987
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    |||||||||||| ||||| ||||||||| |||| |||||||||||||||    
T  25037939 attaaatacaaagaagtcactgactctggacttacgttatcactttagt 25037987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 25043151 - 25043199
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    |||||||||||| ||||| ||||||||| |||| |||||||||||||||    
T  25043151 attaaatacaaagaagtcactgactctggacttacgttatcactttagt 25043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 3117710 - 3117757
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttag 158  Q
    |||||||||||| || || |||||||| ||||||||||||||||||||    
T  3117710 attaaatacaaagaaatctctgactctccacttccgttatcactttag 3117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 50107265 - 50107215
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 161  Q
    ||||||||||||  |||| |||| | |||||||||||||||||||||||||    
T  50107265 attaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtcc 50107215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 1001164 - 1001264
Alignment:
Q  60 actttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    ||||| |||| ||||| ||||||||| || || | ||||||||| | | | ||||||||||||  |||| |||| | |||||||| ||||||| ||||||    
T  1001164 actttagtccatgactttgcacctcgttgccacaaaggtccatgactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagt 1001263  T
Q  160 c 160  Q
    |    
T  1001264 c 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 9e-35; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 47878605 - 47878491
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||| || | | | ||||||||||||||||||||||||||| |||||||||||||    
T  47878605 aaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatc 47878506  T
Q  152 actttagtccctgac 166  Q
    |||||||||| ||||    
T  47878505 actttagtccatgac 47878491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 53771175 - 53771062
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| |||||||||||||||||||| ||||| |||||||| || | |||||||||||||||| ||| |||||||||||||||||||    
T  53771175 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccg 53771076  T
Q  147 ttatcactttagtc 160  Q
    ||||||||||||||    
T  53771075 ttatcactttagtc 53771062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 47874561 - 47874675
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||||||||||||||||| ||| |||| |||||| |||||| ||| |||||||| || | ||  ||||||||||||||||||||||| ||||||||||||    
T  47874561 tgagtaaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccg 47874660  T
Q  147 ttatcactttagtcc 161  Q
    |||||||||||||||    
T  47874661 ttatcactttagtcc 47874675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 42278051 - 42278193
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| |||| ||| |||||| || ||||||| |||||||| || | | | ||||||||||||||||| |||||||||||||||||||||||    
T  42278051 aaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatc 42278150  T
Q  152 actttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    |||||| |||||||| ||       ||||||||||||||||||    
T  42278151 actttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 31844724 - 31844828
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| ||||||  |||||||||||||||||| |||||||| || | ||| |||||||||||| |||||||| ||||| ||||||| |||||    
T  31844724 aaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttcccttatc 31844823  T
Q  152 acttt 156  Q
    |||||    
T  31844824 acttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 26173062 - 26172954
Alignment:
Q  53 aatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatca 152  Q
    |||||||||||| |||||  ||| |||||||  |||||| | |||||| || | ||  |||||||||||||||||| |||||||||||||||||||||||    
T  26173062 aatagtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatca 26172963  T
Q  153 ctttagtcc 161  Q
    |||||||||    
T  26172962 ctttagtcc 26172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 39868919 - 39869036
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    ||||||||| || ||||| ||| |||||||||||||||||||| | | |||||| || | || ||||||||||||| |||| |  |||||||||||||||    
T  39868919 tgagtaaattgttactttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagttc--gactctgcacttccg 39869016  T
Q  147 ttatcactttagtccctgac 166  Q
    |||||||||||||| |||||    
T  39869017 ttatcactttagtctctgac 39869036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 53770331 - 53770443
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||| |||||||| ||| |||||||||||||||||  ||| |||||| | || | |||||||||||||||| |||||  ||||||||||||||| |    
T  53770331 gagtaaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccat 53770430  T
Q  148 tatcactttagtc 160  Q
    ||||||| |||||    
T  53770431 tatcactctagtc 53770443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 54574427 - 54574532
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||| |||| | ||| |||||||| |||||||||| |||||||  || | ||| ||||||||||||||||| | | |||||||||||||||||||    
T  54574427 aaatagtcattttgcttcctcactctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatc 54574526  T
Q  152 acttta 157  Q
    ||||||    
T  54574527 acttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 4703343 - 4703221
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| |||||||| ||  |||||||| || |||||||||| |||||||| |  | |||||||||||||||| |||||  ||||| | ||||||||    
T  4703343 tgagcaaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccg 4703244  T
Q  147 ttatcactttagtccctgacatt 169  Q
    |||||||||||||| ||| ||||    
T  4703243 ttatcactttagtctctggcatt 4703221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 48740141 - 48740027
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||| |||||||| |||| || |||||||||||  |||||  ||| ||| || | || ||||||||||||| |||||||  |||||||||||| ||||||    
T  48740141 aaatggtcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatc 48740042  T
Q  152 actttagtccctgac 166  Q
    |||||||||||||||    
T  48740041 actttagtccctgac 48740027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 26685524 - 26685426
Alignment:
Q  66 gtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctga 165  Q
    |||||||||||||||||||||||||| |||||||| |  |      ||||||||| | |||||| ||||| |||||||||||||||||||||||| ||||    
T  26685524 gtccctgactctgcacctcgctgtcacataggtccctcact-----ttaaatacatagaagtccttgactatgcacttccgttatcactttagtctctga 26685430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 50694809 - 50694893
Alignment:
Q  110 aattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacattnnnnnnntctgttaagtgatgatgt 194  Q
    ||||||||| ||||||||  |||| ||||||||||||||||| |||||||||||||| ||       ||||||||||||||||||    
T  50694809 aattaaatataaataagtttctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 4701826 - 4701880
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctga 165  Q
    |||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||    
T  4701826 attaaatacaaagaagtccccgactatgcacttccgctatcactttagtccctga 4701880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 26170701 - 26170751
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 161  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  26170701 attaaatacaaataagttccttactctgcacttccattatcactttagtcc 26170751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 19050299 - 19050348
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||||    
T  19050299 attaaatacaaagaagtctcggactctgcacttccgttatcactttagtc 19050348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 21621884 - 21621938
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcactttagtccctga 165  Q
    ||||||||||||  ||||  ||| | |||||||||||||||||||||||||||||    
T  21621884 attaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctga 21621938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 42392014 - 42391897
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccct--gactctgcacttc 144  Q
    |||||||||  ||||||| ||| ||||||| ||||||| |||||| |||||||  || | ||  ||||||||||||| |||||||   | | ||||||||    
T  42392014 tgagtaaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccctaataatgtgcacttc 42391915  T
Q  145 cgttatcactttagtccc 162  Q
    | |||||| |||||||||    
T  42391914 ctttatcagtttagtccc 42391897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 54574867 - 54574822
Alignment:
Q  111 attaaatacaaataagtccctgactctgcacttccgttatcacttt 156  Q
    ||||||||||||||| || || |||||||||||| |||||||||||    
T  54574867 attaaatacaaataaatctctaactctgcacttctgttatcacttt 54574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 116057 - 116170
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| || ||| | |||||| |||||||||| |||||||| || | ||| ||||||||||||||||||||||||| |||||||||||||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatc 116156  T
Q  152 actttagtccctga 165  Q
    ||||||||||||||    
T  116157 actttagtccctga 116170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 31218952 - 31219070
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||| ||||||||  || |||||||||||||||||||||| |||||||| |  | ||| |||||||||||| |||| ||||||||||||||||||    
T  31218952 tgagcaaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccg 31219051  T
Q  147 ttatcactttagtccctga 165  Q
    ||||||||||| |||||||    
T  31219052 ttatcactttaatccctga 31219070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 30747996 - 30748109
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| || |  || |||||||||||| ||||| |||||||| ||||| ||    
T  30747996 tgagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcg 30748095  T
Q  147 ttatcactttagtc 160  Q
    ||||||||||||||    
T  30748096 ttatcactttagtc 30748109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 31219281 - 31219167
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    |||| ||||||||  ||||||||||||||||||||||||| |||||||  |  | ||| |||||||||||| |||| ||||||||  |||||||||||||    
T  31219281 aaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatc 31219182  T
Q  152 actttagtccctgac 166  Q
    ||||||||| |||||    
T  31219181 actttagtctctgac 31219167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 23507951 - 23508062
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||||||| ||| ||| |||| |||||| |||||| |||||| | ||   ||| |||||||||||| || ||  ||||| | ||||||| |||||    
T  23507951 aaatagtcactttagtctctg-ctctacacctccctgtcacataggttcctgattcaggattaaatacaaacaaatctatgactttacacttcctttatc 23508049  T
Q  152 actttagtccctg 164  Q
    |||||||||||||    
T  23508050 actttagtccctg 23508062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 12676595 - 12676474
Alignment:
Q  48 gagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgt 147  Q
    |||||||||||||||||| |  |||||||||||||||| ||||| |  ||||  || | ||| ||||||||||||  |||| || | | |||||||  ||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  148 tatcactttagtccctgacatt 169  Q
    ||||| ||||||| ||| ||||    
T  12676495 tatcagtttagtctctggcatt 12676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 33987243 - 33987191
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtc 99  Q
    |||||||||||||| |||| | ||| |||||||| |||||||||||| |||||    
T  33987243 tgagtaaatagtcaatttgattccttactctgcaactcgctgtcatagaggtc 33987191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 79075 - 79183
Alignment:
Q  52 aaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatc 151  Q
    ||||||||| ||| || ||||||||||||||||||||||| |||||||| || | ||  |||||||| ||| |||||| ||||| ||||| |||| ||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatc 79174  T
Q  152 actttagtc 160  Q
    |||||||||    
T  79175 actttagtc 79183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 74433 - 74331
Alignment:
Q  53 aatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatca 152  Q
    |||||||| ||| ||||||||||||||| ||| |||||| |||||||| |  | ||  |||||||||||| |||||| ||||||| ||| || | |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtccttgactctacacctctgatatca 74334  T
Q  153 ctt 155  Q
    |||    
T  74333 ctt 74331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 79809 - 79696
Alignment:
Q  47 tgagtaaatagtcactttggtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccg 146  Q
    |||| |||||||||||||  |||||||||| |||||||| ||| | ||| || | || | ||  |||||||||||| |||||  |||||||||| |||      
T  79809 tgagcaaatagtcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtctttgactctgcatttcta 79710  T
Q  147 ttatcactttagtc 160  Q
    |||||| |||||||    
T  79709 ttatcattttagtc 79696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 5656 - 5709
Alignment:
Q  107 cagaattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 160  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  5656 cagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtc 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 6357 - 6264
Alignment:
Q  66 gtccctgactctgcacctcgctgtcatataggtccatggcccagaattaaatacaaataagtccctgactctgcacttccgttatcactttagt 159  Q
    |||| ||||||||||| ||||| ||||| |||||||||   |||||||||||| ||| || ||  |||| ||| ||||||||||||||||||||    
T  6357 gtccttgactctgcacttcgctatcatagaggtccatgattcagaattaaatataaagaaatcgatgacactgtacttccgttatcactttagt 6264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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