View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6411_low_3 (Length: 293)
Name: NF6411_low_3
Description: NF6411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6411_low_3 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 14455585 - 14455349
Alignment:
| Q |
15 |
acctgtgatgttatcgcaataaattccacgccattgacaacaattggtgtttttccacgaagagagacggttgtgagaatcctcaaggccacttttgaag |
114 |
Q |
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| T |
14455585 |
acctgtgatgttatcgcaataaattccacgccattgacaacaattggtgtttttccacgaagagagacggttgtgagaatcctcaagaccacttttgaag |
14455486 |
T |
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| Q |
115 |
tcaacaagagcttcatgatcagaagctaagcactcaatagctagagcactgctattaacataattcaaaaacaataatccataaattagtaatattaaca |
214 |
Q |
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| T |
14455485 |
tcaacaagagcctcatgatcagaagctaagcattcaatagctagagtattgctattaacataattcagaaacaacaatccataaattagtaatattaaca |
14455386 |
T |
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| Q |
215 |
accaaacttgagacatgttttctattgaagttgctct |
251 |
Q |
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| T |
14455385 |
accaaacttgagacatgttttctattgaagttgctct |
14455349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 14495742 - 14496005
Alignment:
| Q |
16 |
cctgtgatgttatcgcaataaattccacgccattgacaacaattggtgtttttccacgaagagagacggttgtgagaatcctcaaggccacttttgaagt |
115 |
Q |
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| T |
14495742 |
cctgtgttgttatcacagtaaattccacgccattgacaacagttggtgtttctccacgaagagagacggttgtgagaatcctcaaggccatttttgaagt |
14495841 |
T |
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| Q |
116 |
caacaagagcttcatgatcagaagctaagcactcaatagctagagcactgctattaacataattcaaaaacaataatccataaattagtaatattaacaa |
215 |
Q |
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| T |
14495842 |
caacaagagcttcatgatcagaagctaagcattcaatagctagagcattgctattaacataattcagaaacaacaagccataaattagtaatattaacaa |
14495941 |
T |
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| Q |
216 |
ccaaacttgagacatgttttctattgaagttgctctccggctctggttgtataccgatgattat |
279 |
Q |
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| T |
14495942 |
ccaaacttgagacatgttttcctttgaagttgctctcaagctctggctgtatactgataattat |
14496005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 14460083 - 14459847
Alignment:
| Q |
16 |
cctgtgatgttatcgcaataaattccacgccattgacaacaattggtgtttttccacgaagagagacggttgtgagaatcctcaaggccacttttgaagt |
115 |
Q |
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| T |
14460083 |
cctgtgatgttatcacagtaaattccacgccattgacaacagttggtgtttctccatgaagagagatggttgtgagaatcctcaagcccatttttgaagt |
14459984 |
T |
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| Q |
116 |
caacaagagcttcatgatcagaagctaagcactcaatagctagagcactgctattaacataattcaaaaacaataatccataaattagtaatattaacaa |
215 |
Q |
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| T |
14459983 |
ctacaagagcttcatgatcagaagctaagcattcaatagctagagctcggctgttaaaagaaatatcaagtaacaagctataaactattaacattaacaa |
14459884 |
T |
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| Q |
216 |
ccaaacttgagacatgttttctattgaagttgctctc |
252 |
Q |
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| T |
14459883 |
ctaaacttgagaaatgttttccattgatgtttctctc |
14459847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 14471344 - 14471581
Alignment:
| Q |
15 |
acctgtgatgttatcgcaataaattccacgccattgacaacaattggtgtttttccacgaagagagacggttgtgagaatcctcaaggccacttttgaag |
114 |
Q |
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| T |
14471344 |
acctgtgatgttatcgcagcatattccatgccattgacaacaattgttgcttctccacgacgagagacggttgtgagaatcctcaatcccatttttaaag |
14471443 |
T |
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| Q |
115 |
tcaacaagagcttcatgatcagaagctaagcactcaatagctagagcactgctattaacataattcaaaaacaataatccataaattagtaatattaaca |
214 |
Q |
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| T |
14471444 |
tctataagagcttcctgatcagaagccaagcattgaatagctacagtattgctgttaacagaaattgcaactaacaagccataaactaataatattaaca |
14471543 |
T |
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| Q |
215 |
accaaacttgagacatgttttctattgaagttgctctc |
252 |
Q |
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| T |
14471544 |
tctcaacttgagacatgtttcccattgaaattgctctc |
14471581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 9660 - 9608
Alignment:
| Q |
18 |
tgtgatgttatcgcaataaattccacgccattgacaacaattggtgtttttcc |
70 |
Q |
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| T |
9660 |
tgtgatgttatcgcaatatattccgtgccattgacaacaattgttgtttttcc |
9608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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