View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6411_low_5 (Length: 249)
Name: NF6411_low_5
Description: NF6411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6411_low_5 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14455629 - 14455872
Alignment:
| Q |
1 |
ttgattatcctcctagcaggtatggaatgtggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14455629 |
ttgattatcctcctagcaggtatggaatgtggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagctt |
14455728 |
T |
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| Q |
101 |
caacacatttggtgaaattccaattcctaattttttaggatcattggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14455729 |
caacacatttggtgaaattccaattcctaattttttaggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattcca |
14455828 |
T |
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| Q |
201 |
cctcatttgggaaacctttctcgcttgcaatctcttcatctcac |
244 |
Q |
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| T |
14455829 |
ccccatttgggaaacctttctcgcttgcaatctcttgatctcac |
14455872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 14495692 - 14495478
Alignment:
| Q |
30 |
tggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattccta |
129 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14495692 |
tggaaactgagtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagcttcaacacatttggtgaaattccaattccta |
14495593 |
T |
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| Q |
130 |
attttttaggatcattggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaacctttctcgcttgca |
229 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
14495592 |
agtttttaggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcacttgca |
14495493 |
T |
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| Q |
230 |
atctcttcatctcac |
244 |
Q |
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|||| || ||||||| |
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| T |
14495492 |
atctattgatctcac |
14495478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 14471281 - 14471059
Alignment:
| Q |
20 |
gtatggaatgtggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaatt |
119 |
Q |
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||||| |||||||||||| |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||| | | ||| |
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| T |
14471281 |
gtatgaaatgtggaacctacgtggtgagctaagaccgtctttgatgaaactcaaatcactaaggcatttagacttgagcttcaacacattcagagcaata |
14471182 |
T |
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| Q |
120 |
ccaattcctaattttttaggatcattggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaaccttt |
219 |
Q |
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||||| ||||| |||||||||||||| || ||||| |||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||| |||| |
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| T |
14471181 |
ccaatacctaagtttttaggatcattagtaaatttacaatatctgaacctttcaaatgctggatttgctggtttaattccaccccatttgggaaatcttt |
14471082 |
T |
|
| Q |
220 |
ctcgcttgcaatctcttcatctc |
242 |
Q |
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||| ||||||||||||| ||||| |
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| T |
14471081 |
ctcacttgcaatctcttgatctc |
14471059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14460128 - 14460361
Alignment:
| Q |
1 |
ttgattatcctcctagcaggtatggaatgtggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagctt |
100 |
Q |
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|||||| | ||||||| | ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| || ||| | ||||||||||||||||| |
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| T |
14460128 |
ttgattcttctcctagaaagtatgaaatgtggaaccaaagtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagctt |
14460227 |
T |
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| Q |
101 |
caacacatttggtgaaattccaattcctaattttttaggatcattggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattcca |
200 |
Q |
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||||||||| || ||| |||||||| | || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
14460228 |
caacacattcaatggaataccaattcccgagttctttggatcattggtgaatttgcaatatctgaacctgtcaac---------tgctggtttaattcca |
14460318 |
T |
|
| Q |
201 |
cctcatttgggaaacctttctcgcttgcaatctcttcatctca |
243 |
Q |
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|| ||||||||||||||||||| |||||||| |||| |||||| |
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| T |
14460319 |
ccccatttgggaaacctttctcacttgcaatatcttgatctca |
14460361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9707 - 9941
Alignment:
| Q |
1 |
ttgattatcctcctagcaggtatggaatgtggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagctt |
100 |
Q |
| |
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|||||| | ||||||| | ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| || ||| | ||||||||||||||||| |
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| T |
9707 |
ttgattcttctcctagaaagtatgaaatgtggaaccaaagtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagctt |
9806 |
T |
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| Q |
101 |
caacacatttggtgaaattccaattcctaattttttaggatcattggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattcca |
200 |
Q |
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||||||||| || ||| |||||||| | || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
9807 |
caacacattcaatggaataccaattcccgagttctttggatcattggtgaatttgcaatatctgaacctgtcaac---------tgctggtttaattcca |
9897 |
T |
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| Q |
201 |
cctcatttgggaaacctttctcgcttgcaatctcttcatctcac |
244 |
Q |
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|| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
9898 |
ccccatttgggaaacctttctctcttgcaatctcttgatctcac |
9941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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