View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_high_2 (Length: 542)
Name: NF6412_high_2
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 20 - 531
Target Start/End: Original strand, 16887468 - 16887978
Alignment:
| Q |
20 |
cactcgtcacattgagattcaacacaagatccacgcatctaatagcaaaataatagagccaggattcccaactttcagcagcagaatcctgcattcaggc |
119 |
Q |
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| T |
16887468 |
cactcgtcacattgagattcgacacaagatccacgcatctaatagcaaaata-tagagccaggattcccaactttcagcagcagaatcctgcattcaggc |
16887566 |
T |
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| Q |
120 |
aattggacaatgtcggccgaaaggtgatgttgatgaaaggaaaagagattgcagtttcattttaattgacaataatggtcatacaacattaagtcagtgt |
219 |
Q |
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| T |
16887567 |
aattggacaatgtcggccgaaaggtgatgttgatgaaaggaaaagagattgcagtttcattttaattgacaataatggtcatacaacatcaagtcagtgt |
16887666 |
T |
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| Q |
220 |
atgcatgtgagagtatgagcgaatatgcaagagacaaacccgatgtagttgaagagtcttcgtttttgaactgtccaacgcaactccacttgctgcacac |
319 |
Q |
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| T |
16887667 |
atgcatgtgagagtatgagcgaatatgcaagagacaaacccgatgtagttgaagagtcttcgtttttgaactgtccaacgcaactccacttgctgcacac |
16887766 |
T |
|
| Q |
320 |
ctccaatgcacagagcaggttaaggtagagtgaattcttgcaaccgtttacttgtacaatgtgtcaccgacacatatcaagtttcatgcacatgaataca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16887767 |
ctccaatgcacagagcaggttaaggtagagtgaattcttgcaaccgtttacttgtacaatgtgtcaccgacacatatcaagtttcatgcacatgaataca |
16887866 |
T |
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| Q |
420 |
ttactatcttctaaaacatccggttttgaaatgttaaaaattaagaatccatgatttctatactcaaaagtcaaaaggtatcattaggttgccccatctc |
519 |
Q |
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| T |
16887867 |
ttactatcttctaaaacctccggttttgaaatgttaaaaattaagaatccatgatttctatactcaaaagtcaaaaggtatcattaggttgccccatctc |
16887966 |
T |
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| Q |
520 |
gcaggtgttcat |
531 |
Q |
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| T |
16887967 |
acaagtgttcat |
16887978 |
T |
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