View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_high_4 (Length: 460)
Name: NF6412_high_4
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 50041720 - 50042165
Alignment:
| Q |
1 |
tcatcaatggcgggttcagagtcagcactaccacaagcagaagcagaaaccgaaaaccaactcacttctctcatctacggtgcgtaatcaacaactctta |
100 |
Q |
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| T |
50041720 |
tcatcaatggcgggttcagagtcagcactaccacaagcagaagcagaaaccgaaaaccaactcacttctctcatctacggtgcgtaatcaacaactctta |
50041819 |
T |
|
| Q |
101 |
atcgcttctatttgttaaacctaatctctaattcgaatcatactcgatgcgatcttccattcgaaccaaacgatacacgatttgattcattattcaattt |
200 |
Q |
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| T |
50041820 |
atcgcttctatttgttaaacctaatctctaattcgaatcatactcgatgcgatcttccattcgaaccaaacgatacacgatttgattcattattcaattt |
50041919 |
T |
|
| Q |
201 |
catctttctttgcttaat-cgtgcagagatgtcaaacgaagctcaatctataatggagaacatgcttaagatgatcgcgttagttacttaatcataatta |
299 |
Q |
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| T |
50041920 |
catctttctttgcttaattcgtgcagagatgtcaaacgaagctcaatctataatggagaacatgcttaagatgatcgcgttagttacttaatcataatta |
50042019 |
T |
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| Q |
300 |
tttcttcattttttacatcattactatttttgttatattataagataacaaaattgagtgattgtttttcgatttcagatctaatattgtttttgtacta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50042020 |
tttcttcattttttacatcattactatttttgttatgttataagataacaaaattgagtgattgtttttcgatttcagatctaatattgtttttgtacta |
50042119 |
T |
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| Q |
400 |
tttttgcagtgagattaatcaaaattctgcagtgattgaggaagag |
445 |
Q |
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| T |
50042120 |
tttttgcagtgagattaatcaaaattctgcagtgattgaggaagag |
50042165 |
T |
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