View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_high_5 (Length: 362)
Name: NF6412_high_5
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 7627745 - 7627411
Alignment:
| Q |
10 |
attatactccctccgtttctttataactatagcttttatataannnnnnn-gtttctaattaactgtcacattcaaagtgactgatgagtattttgcaag |
108 |
Q |
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| T |
7627745 |
attatactccctccgtttctttataactataacttttacataaatttttttgtttctaattaactgtcactttcaaagtgactgatgagtattttgcaag |
7627646 |
T |
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| Q |
109 |
aaccctagcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaact |
208 |
Q |
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| T |
7627645 |
aaccctagcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaact |
7627546 |
T |
|
| Q |
209 |
atgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttca |
308 |
Q |
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| T |
7627545 |
atgtggtttgctccatagaagaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttcaagaagcaagaatgacacttca |
7627446 |
T |
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| Q |
309 |
caagaaaaaggaagaagaacaactcttgaaggtgt |
343 |
Q |
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| T |
7627445 |
caagaaaaaggaagaagaacaactcttgaaggtgt |
7627411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 11356770 - 11356846
Alignment:
| Q |
187 |
tccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatga |
263 |
Q |
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| T |
11356770 |
tccatgacataaagattcgactatttggtgtgcgtcatagaagaatccaatgatgttacaattttatccattgatga |
11356846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 8921022 - 8921360
Alignment:
| Q |
10 |
attatactccctccgtttctttataactatagcttttatataannnnnnngtttctaattaactgtcacattcaaagtgact-----gatgagtattttg |
104 |
Q |
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| T |
8921022 |
attatactccctccgttcctttataactgtcgcttttacataatttttttgtttctaattaactgtcactttcaaagtgaatcagtggatgagtattttg |
8921121 |
T |
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| Q |
105 |
caagaaccctagcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattc |
204 |
Q |
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| T |
8921122 |
caagaaccctagcaattgcaaacaagatgtatgcacatggagaaagaaaggaaaaaaaactatggtggagaagattcttaggtccatgacttcaagattc |
8921221 |
T |
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| Q |
205 |
aactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacac |
304 |
Q |
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| T |
8921222 |
aactatgtggtttgctccatagaagaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacac |
8921321 |
T |
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| Q |
305 |
ttcacaagaaaaaggaagaagaacaactcttgaaggtgt |
343 |
Q |
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| T |
8921322 |
ttcacaagaaaaaggaagaagaacaactcttgaaggtgt |
8921360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 35372221 - 35372092
Alignment:
| Q |
172 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaa |
271 |
Q |
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||||||||| |||| |||||||| |||||||||||||||||||| || | ||||||||||| ||||| ||||||||| |||| ||| ||||||||||| |
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| T |
35372221 |
gagaagatttttagatccatgacatcaagattcaactatgtggtgtgtactatagaagaatctaatgatgttaccactctttctattgatgaactgcaat |
35372122 |
T |
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| Q |
272 |
gcaattttcttgtccaagaagcaagaatga |
301 |
Q |
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| T |
35372121 |
gcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 24659113 - 24659053
Alignment:
| Q |
172 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctccatagaagaat |
232 |
Q |
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| T |
24659113 |
gagaagattctcatatccatgacatcaagattcaactatgtggtctactctatagaagaat |
24659053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 10784361 - 10784303
Alignment:
| Q |
187 |
tccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttac |
245 |
Q |
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|||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| ||||| |
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| T |
10784361 |
tccatgacatcaagattcaattatgttgtttgctcaattgaagaatcaaatgatgttac |
10784303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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