View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6412_low_1 (Length: 773)

Name: NF6412_low_1
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6412_low_1
NF6412_low_1
[»] chr2 (7 HSPs)
chr2 (323-497)||(41199989-41200171)
chr2 (554-663)||(41199878-41199987)
chr2 (661-758)||(41199758-41199856)
chr2 (247-300)||(39851656-39851709)
chr2 (247-300)||(39855652-39855705)
chr2 (247-300)||(39860326-39860379)
chr2 (446-511)||(41210124-41210189)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 323 - 497
Target Start/End: Complemental strand, 41200171 - 41199989
Alignment:
Q  323 gaaaatttctaaaaatgtgaatggct-gtcctaaaaggttattaaacaagtttcatgttttctataaccaacctatacaatagtacaatatgttttct-- 419  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||      
T  41200171 gaaaatttctaaaaatgtgaatggctagtcctaaaaggttattaaacaagtttcatgttttctataaccaacctacacaatagcacaatttgttttctat 41200072  T
Q  420 -----ataagcatgcatagagactgatgctgttttgaaatgtaagttgttagacctttcggcttattcagttaaaaaagaaaa 497  Q
         ||||||||| |||| | ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  41200071 aacctataagcatgtatagcggctgatgctgctttgaaatgtaagttgttaaaccttttggcttattcagttaaaaaaaaaaa 41199989  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 554 - 663
Target Start/End: Complemental strand, 41199987 - 41199878
Alignment:
Q  554 ttattcatgcagcctatcaaaattattaaaatatgagctatcaatcatctaaagttacacttaaagcttattagattaaatcataagctttgaaaactga 653  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  41199987 ttatccatgcagcctatcaaaattattaaaatacgagctatcaatcatctaaagttacatttaaagcttattagattaaatcataagctttcaaaactga 41199888  T
Q  654 acactggttg 663  Q
    ||||||||||    
T  41199887 acactggttg 41199878  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 661 - 758
Target Start/End: Complemental strand, 41199856 - 41199758
Alignment:
Q  661 ttgacctaaatatcaaataattatactgaaaaaggttttcagaaa-acatggtctggtttcagtaaatggtttgattaaaggaaccatgatgatcatat 758  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41199856 ttgacctaaatatcaaataattatactgaaaaaggttttcagtaacacatggtctggtttcagtaaatggtttgattaaaggaaccatgatgatcatat 41199758  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 39851709 - 39851656
Alignment:
Q  247 atgttaaatcaaaattcatacattataatacattagaaaatgaggttactcacg 300  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  39851709 atgttaaatcaaaatacatacattataatacattagaaaacaaggttactcacg 39851656  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 39855705 - 39855652
Alignment:
Q  247 atgttaaatcaaaattcatacattataatacattagaaaatgaggttactcacg 300  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  39855705 atgttaaatcaaaatacatacattataatacattagaaaacaaggttactcacg 39855652  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 39860379 - 39860326
Alignment:
Q  247 atgttaaatcaaaattcatacattataatacattagaaaatgaggttactcacg 300  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  39860379 atgttaaatcaaaatacatacattataatacattagaaaacaaggttactcacg 39860326  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 41210189 - 41210124
Alignment:
Q  446 ttttgaaatgtaagttgttagacctttcggcttattcagttaaaaaagaaaagcaaattacttgca 511  Q
    |||||||||||||||||||| |||||| |||   ||| ||| |||||||||| |||||||||||||    
T  41210189 ttttgaaatgtaagttgttaaaccttttggcgcgttccgttcaaaaagaaaaacaaattacttgca 41210124  T

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