View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6412_low_10 (Length: 310)

Name: NF6412_low_10
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6412_low_10
NF6412_low_10
[»] chr5 (9 HSPs)
chr5 (2-292)||(37207998-37208289)
chr5 (71-297)||(11852025-11852251)
chr5 (177-282)||(15469197-15469302)
chr5 (221-297)||(11849917-11849993)
chr5 (221-297)||(23164254-23164330)
chr5 (221-297)||(22601010-22601087)
chr5 (221-297)||(37215561-37215638)
chr5 (221-297)||(21743721-21743797)
chr5 (221-297)||(1779222-1779293)
[»] chr4 (13 HSPs)
chr4 (6-297)||(45162288-45162580)
chr4 (100-297)||(42470647-42470844)
chr4 (98-297)||(13774260-13774460)
chr4 (22-166)||(42470460-42470605)
chr4 (221-297)||(42468439-42468515)
chr4 (221-297)||(50855771-50855847)
chr4 (224-297)||(13776556-13776630)
chr4 (221-297)||(19429076-19429153)
chr4 (107-260)||(24907962-24908114)
chr4 (217-297)||(45167180-45167260)
chr4 (71-121)||(13774467-13774517)
chr4 (100-166)||(13774531-13774599)
chr4 (221-275)||(8739508-8739562)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-297)||(88455-88735)
[»] chr2 (12 HSPs)
chr2 (14-297)||(42277574-42277858)
chr2 (96-297)||(31486992-31487194)
chr2 (221-297)||(5164151-5164227)
chr2 (221-297)||(42275556-42275632)
chr2 (2-80)||(31487184-31487262)
chr2 (227-297)||(8995076-8995146)
chr2 (216-297)||(15730023-15730104)
chr2 (221-297)||(31489276-31489353)
chr2 (221-283)||(39816089-39816151)
chr2 (221-282)||(23860126-23860187)
chr2 (229-282)||(34576612-34576665)
chr2 (231-275)||(29802108-29802152)
[»] chr1 (12 HSPs)
chr1 (14-297)||(10909215-10909499)
chr1 (14-283)||(2409748-2410019)
chr1 (100-297)||(734458-734653)
chr1 (221-297)||(29833970-29834046)
chr1 (221-297)||(10911459-10911535)
chr1 (221-297)||(29833076-29833152)
chr1 (219-297)||(13011805-13011883)
chr1 (221-297)||(8933549-8933625)
chr1 (221-283)||(2403835-2403897)
chr1 (220-267)||(419169-419216)
chr1 (44-117)||(4819146-4819219)
chr1 (44-117)||(4830946-4831019)
[»] scaffold1361 (1 HSPs)
scaffold1361 (29-297)||(63-333)
[»] scaffold0050 (2 HSPs)
scaffold0050 (2-282)||(29453-29734)
scaffold0050 (221-282)||(31768-31829)
[»] chr7 (25 HSPs)
chr7 (71-297)||(19786889-19787116)
chr7 (2-250)||(42680564-42680812)
chr7 (68-297)||(8733342-8733572)
chr7 (71-295)||(16534985-16535209)
chr7 (71-295)||(16630453-16630677)
chr7 (100-297)||(3932823-3933021)
chr7 (2-297)||(3052313-3052596)
chr7 (2-135)||(3053431-3053565)
chr7 (221-297)||(3935062-3935138)
chr7 (77-282)||(21768926-21769130)
chr7 (217-297)||(19789195-19789276)
chr7 (220-297)||(42678570-42678647)
chr7 (221-297)||(8731176-8731252)
chr7 (221-297)||(18395421-18395497)
chr7 (221-297)||(36464213-36464289)
chr7 (220-295)||(16496952-16497027)
chr7 (221-297)||(8414490-8414566)
chr7 (221-277)||(42680806-42680862)
chr7 (177-291)||(19093804-19093912)
chr7 (100-166)||(3933062-3933130)
chr7 (100-166)||(16534903-16534971)
chr7 (100-166)||(16630691-16630759)
chr7 (100-166)||(19787130-19787198)
chr7 (100-166)||(8733263-8733331)
chr7 (221-260)||(28610268-28610308)
[»] chr8 (9 HSPs)
chr8 (96-297)||(36379340-36379542)
chr8 (100-297)||(4877100-4877297)
chr8 (22-166)||(4877339-4877484)
chr8 (221-297)||(24519153-24519229)
chr8 (2-80)||(36379272-36379350)
chr8 (220-297)||(4879428-4879505)
chr8 (221-297)||(21268120-21268197)
chr8 (221-297)||(36377181-36377257)
chr8 (55-164)||(7938990-7939099)
[»] chr6 (1 HSPs)
chr6 (2-282)||(20642300-20642581)
[»] chr3 (8 HSPs)
chr3 (98-297)||(4530944-4531144)
chr3 (2-166)||(18965931-18966096)
chr3 (221-297)||(4533241-4533317)
chr3 (99-243)||(1701338-1701483)
chr3 (56-166)||(26306780-26306890)
chr3 (71-121)||(4531151-4531201)
chr3 (100-166)||(4531215-4531283)
chr3 (177-217)||(18966166-18966206)
[»] scaffold0599 (1 HSPs)
scaffold0599 (221-297)||(1725-1801)
[»] scaffold0045 (2 HSPs)
scaffold0045 (77-282)||(64082-64280)
scaffold0045 (77-282)||(71414-71612)
[»] scaffold0098 (1 HSPs)
scaffold0098 (221-297)||(3707-3783)
[»] scaffold0312 (1 HSPs)
scaffold0312 (220-267)||(11355-11402)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 37208289 - 37207998
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaa 101  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  37208289 attgtagtgatgagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatggtggtgttagtttcgcgaacaaa 37208190  T
Q  102 atggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaa 201  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  37208189 atggccgcaaagtgaagttttacaaaggcaactccttgcgcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa 37208090  T
Q  202 ccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaag-ttatatta 292  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  37208089 ccagctctgatgccaaatctggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatta 37207998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 71 - 297
Target Start/End: Original strand, 11852025 - 11852251
Alignment:
Q  71 acaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnn 170  Q
    |||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |        
T  11852025 acaaaatgacggtgttagttttgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgtaaactcactttccgtttatttt 11852124  T
Q  171 nnngcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 270  Q
       || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11852125 ttcgctcaaactcaactccgaggtatcataaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 11852224  T
Q  271 ttctctaagaaaagttatattacttga 297  Q
    ||||| |||||||||||||||||||||    
T  11852225 ttctcaaagaaaagttatattacttga 11852251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 15469302 - 15469197
Alignment:
Q  177 caaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctct 276  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||     
T  15469302 caaactcaactctgaggtatcataacctgctctgatgccaattctggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctca 15469203  T
Q  277 aagaaa 282  Q
    ||||||    
T  15469202 aagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 11849917 - 11849993
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  11849917 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttga 11849993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 23164254 - 23164330
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 23164330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 22601087 - 22601010
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaag-ttatattacttga 297  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||    
T  22601087 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttga 22601010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 37215638 - 37215561
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaag-ttatattacttga 297  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttga 37215561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 21743797 - 21743721
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  |||||||| ||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttga 21743721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 1779222 - 1779293
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||     ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttga 1779293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 45162580 - 45162288
Alignment:
Q  6 tggtgataagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatgg 105  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  45162580 tggtgatgattggtggttttgttggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatgg 45162481  T
Q  106 ccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaacca- 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||       |||| ||||||||||||||||||| |||| |     
T  45162480 ccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataactag 45162381  T
Q  205 gctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45162380 gctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 45162288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 100 - 297
Target Start/End: Original strand, 42470647 - 42470844
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgt 199  Q
    ||||||||||||||||||||||||  || ||||| | ||||||||||||||||||||||||||||||       || |||||||||||||| ||||||||    
T  42470647 aaatggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaactccgtggtatcgt 42470746  T
Q  200 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42470747 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 42470844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 98 - 297
Target Start/End: Complemental strand, 13774460 - 13774260
Alignment:
Q  98 caaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnn-gcacaaactcaactccgaggtat 196  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||        || ||| ||||||| ||||||||    
T  13774460 caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat 13774361  T
Q  197 cgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttg 296  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13774360 cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttg 13774261  T
Q  297 a 297  Q
    |    
T  13774260 a 13774260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 42470460 - 42470605
Alignment:
Q  22 ttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagtt 120  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| || |||  |||||||||||||||||||||||||||    
T  42470460 ttttgttggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttcacgaacaaaatggccgcaaagtgaagtt 42470559  T
Q  121 ttacaaaggcaactctttgctcacttgaaaactcactttccgttga 166  Q
    | ||||||||||||| ||||||  ||||||||||||||||||||||    
T  42470560 tcacaaaggcaactccttgctcttttgaaaactcactttccgttga 42470605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 42468439 - 42468515
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42468439 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 42468515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 50855771 - 50855847
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttga 50855847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 13776630 - 13776556
Alignment:
Q  224 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttga 13776556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 19429076 - 19429153
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagt-tatattacttga 297  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttga 19429153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 107 - 260
Target Start/End: Original strand, 24907962 - 24908114
Alignment:
Q  107 cgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaaccagc 206  Q
    |||||||||| ||||||  || ||||||| |||||||||| ||||||||||||| |||||       || |||||||||||| |||||||||||||| ||    
T  24907962 cgcaaagtgaggttttaagaaagcaactccttgctcacttaaaaactcactttctgttgatttcttcgctcaaactcaactctgaggtatcgtaacctgc 24908061  T
Q  207 tctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaa 260  Q
    ||| || |||||| ||||| | ||||||||||||| || ||| |||||||||||    
T  24908062 tctaataccaaatttggcttaaggacaaaaggaaatgttgag-aaatagagaaa 24908114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 45167260 - 45167180
Alignment:
Q  217 aatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||| ||||| |||||||||||||| ||  |||||||||||||||||||||||||||  || ||||||||||||| ||||    
T  45167260 aatctagctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttga 45167180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 13774517 - 13774467
Alignment:
Q  71 acaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttt 121  Q
    |||||||| |||||||| ||| |||| ||||||||||||||||||||||||    
T  13774517 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt 13774467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 13774599 - 13774531
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactcttt--gctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||   |||||||||||||||||||||||||||    
T  13774599 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttga 13774531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 8739562 - 8739508
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctc 275  Q
    ||||||||||| ||||||||||  |||||||||| |||||| ||||||| |||||    
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctc 8739508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 88735 - 88455
Alignment:
Q  18 gtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaa 117  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  88735 gtggttttgttggtggtgaaaattgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagtgaa 88636  T
Q  118 gttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaacca-gctctgatgcca 216  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||| || |||    
T  88635 gttttacaaaggaaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccaggctctaatacca 88536  T
Q  217 aatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  88535 aatctggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttga 88455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 42277574 - 42277858
Alignment:
Q  14 agtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaa 112  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| | | |||| |||||| |||||||||||||||||    
T  42277574 agtggtggttttgttggtggtgaagacttgttaaccaacggttttcttcacttcccaaacaaaatgacagggttagttttgcaaacaaaatggccgcaaa 42277673  T
Q  113 gtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaaccagctctgat 212  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  42277674 gtgaagttttactaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgat 42277773  T
Q  213 gccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42277774 atcaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 42277858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 96 - 297
Target Start/End: Complemental strand, 31487194 - 31486992
Alignment:
Q  96 aacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggta 195  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||       ||||||||||||||||||||||    
T  31487194 aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 31487095  T
Q  196 tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattact 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  31487094 tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattact 31486995  T
Q  295 tga 297  Q
    |||    
T  31486994 tga 31486992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 5164151 - 5164227
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 5164227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 42275556 - 42275632
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 42275632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 31487262 - 31487184
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatggc 80  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31487262 attgtggtgatgagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcctaaacaaaatggc 31487184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 8995076 - 8995146
Alignment:
Q  227 agggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttga 8995146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 15730104 - 15730023
Alignment:
Q  216 aaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  15730104 aaatctgacttagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttga 15730023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 31489353 - 31489276
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  31489353 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttga 31489276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaa 283  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 23860187 - 23860126
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaa 282  Q
    ||||||||||||||||||||| | | ||||||||||||||| ||||||||||||| ||||||    
T  23860187 tggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaa 23860126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  229 ggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaa 282  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 29802152 - 29802108
Alignment:
Q  231 acaaaaggaaaggtagagaaaatagagaaacactctaatattctc 275  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||    
T  29802152 acaaaatgaaaggtagagaaaatagtaaaactctctaatattctc 29802108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 10909499 - 10909215
Alignment:
Q  14 agtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaa 112  Q
    |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| | | |||| |||||||||| |||||||||||||    
T  10909499 agtggtggttttgttggtggtgaagacttattaaccaagggttttcttcacttcccaaacaaaatgacagggttagttttgcgaacgaaatggccgcaaa 10909400  T
Q  113 gtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaaccagctctgat 212  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  10909399 gtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgat 10909301  T
Q  213 gccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10909300 gccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttga 10909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 2409748 - 2410019
Alignment:
Q  14 agtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaa 112  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2409748 agtggtgattttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttagttttgcgaacaaaatggccgcaaa 2409847  T
Q  113 gtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaacca-gctctga 211  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||       |||| ||||||||||||||||||| |||| | |||||||    
T  2409848 gtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataactaggctctga 2409947  T
Q  212 tgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  2409948 tgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaa 2410019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 100 - 297
Target Start/End: Original strand, 734458 - 734653
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgt 199  Q
    |||| |||||||||||||| ||||  || ||||||| ||||||||||||||||||||||| ||||||       || |||||||||||||||||||||||    
T  734458 aaatagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgt 734557  T
Q  200 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||||||||||||||||||    
T  734558 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaaca--ctaatattctcaaggaaaagttatattacttga 734653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 29834046 - 29833970
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 29833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 10911535 - 10911459
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10911535 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttga 10911459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 29833076 - 29833152
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 29833152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 13011883 - 13011805
Alignment:
Q  219 tctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  13011883 tctggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttga 13011805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 8933549 - 8933625
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttga 8933625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 2403835 - 2403897
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 2403897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 419169 - 419216
Alignment:
Q  220 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 267  Q
    |||| |||| |||||||| || ||||||||||||||||||||||||||    
T  419169 ctggttcagagacaaaagaaatggtagagaaaatagagaaacactcta 419216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 4819219 - 4819146
Alignment:
Q  44 taaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaa 117  Q
    ||||||| |||||||||| ||||||||||||||||  | |||||  || | ||||||||||| |||||| ||||    
T  4819219 taaccaaaggttttcttcgcttcccaaacaaaatgatgatgttagcttcgtgaacaaaatggacgcaaattgaa 4819146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 4831019 - 4830946
Alignment:
Q  44 taaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaa 117  Q
    ||||||| |||||||||| ||||||||||||||||  | |||||  || | ||||||||||| |||||| ||||    
T  4831019 taaccaaaggttttcttcgcttcccaaacaaaatgatgatgttagcttcgtgaacaaaatggacgcaaattgaa 4830946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 333 - 63
Alignment:
Q  29 ggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaa 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  333 ggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggggttagttttacgaacaaaatggccgcaaagtgaagttttacaaa 234  T
Q  128 ggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctca 227  Q
    |||||||| ||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  233 ggcaactccttgctcacttgaaaactcacttttcgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgataccaaatctggctca 134  T
Q  228 gggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  133 gggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttga 63  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 29734 - 29453
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaa 100  Q
    ||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||    
T  29734 attgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttcacgaacaa 29635  T
Q  101 aatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgta 200  Q
    |||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||       || |||||||||| |||||||||||||    
T  29634 aatggccgtaaagtgaagttttacaaaggcaagtccttgctcacttgaaaacccactttccgttgatttttttgctcaaactcaacgccgaggtatcgta 29535  T
Q  201 accagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  29534 accagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaa 282  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 71 - 297
Target Start/End: Complemental strand, 19787116 - 19786889
Alignment:
Q  71 acaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnn 170  Q
    |||||||| |||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||        
T  19787116 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttactcacttgaaaactcactttccgttgatttt 19787017  T
Q  171 nnngcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 270  Q
       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19787016 ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctagctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 19786917  T
Q  271 ttctctaa-gaaaagttatattacttga 297  Q
    ||||| || |||||||||||||||||||    
T  19786916 ttctcaaaggaaaagttatattacttga 19786889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 42680564 - 42680812
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaa 100  Q
    |||||||| || |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||  ||||||||||||    
T  42680564 attgtggttatgagtggtggttttgttggtggtgaagacttgttaatcaagggttttcttcacttcccaaacaaaatgacggggtttgttttgcgaacaa 42680663  T
Q  101 aatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgta 200  Q
    |||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||  |||||||||||    
T  42680664 aatggttacaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactttgaggtatcgta 42680762  T
Q  201 accagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaa 250  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  42680763 accagctctgatgccaaatctggctcagggacaaaagaaaatgtagagaa 42680812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 8733342 - 8733572
Alignment:
Q  68 caaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgan 167  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||     
T  8733342 caaacaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgat 8733441  T
Q  168 nnnnnngcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 267  Q
          || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  8733442 tttttcgctcaaactcaactccgaggtattgtaaccagctctgatgccaaatctggctcagggacaaaagagaaggtagagaaaatagagaaactctcta 8733541  T
Q  268 atattctctaagaaaag-ttatattacttga 297  Q
    |||||||| |||||||| |||||||| ||||    
T  8733542 atattctcaaagaaaagattatattatttga 8733572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 71 - 295
Target Start/End: Original strand, 16534985 - 16535209
Alignment:
Q  71 acaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnn 170  Q
    |||||||| |||||||| ||| |||| ||||||||||||||||||||| ||||  || ||||||| ||||||||||||||||||||||| ||||||        
T  16534985 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt 16535084  T
Q  171 nnngcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 270  Q
       || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  16535085 cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaagggaaggtagagaaaatagagaaacactctaata 16535184  T
Q  271 ttctctaagaaaagttatattactt 295  Q
    ||||| |||||||||||||||||||    
T  16535185 ttctcaaagaaaagttatattactt 16535209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 71 - 295
Target Start/End: Complemental strand, 16630677 - 16630453
Alignment:
Q  71 acaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnn 170  Q
    |||||||| |||||||| ||| |||| ||||||||||||||||||||| ||||  || ||||||| ||||||||||||||||||||||| ||||||        
T  16630677 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt 16630578  T
Q  171 nnngcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaata 270  Q
       || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  16630577 cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaagggaaggtagagaaaatagagaaacactctaata 16630478  T
Q  271 ttctctaagaaaagttatattactt 295  Q
    ||||| |||||||||||||||||||    
T  16630477 ttctcaaagaaaagttatattactt 16630453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 100 - 297
Target Start/End: Complemental strand, 3933021 - 3932823
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgt 199  Q
    |||| |||||||||||||| ||||  || ||||||| ||||||||||||||||||||||| ||||||       || |||||||||||||||||||||||    
T  3933021 aaatagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgt 3932922  T
Q  200 aacca-gctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3932921 aaccaagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 3932823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 3052596 - 3052313
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaa 100  Q
    ||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  3052596 attgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttagcgaacaa 3052497  T
Q  101 aatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttga-nnnnnnngcacaaactcaactccgaggtatcgt 199  Q
    |||||||||||||||||||||||| |||||| ||| |||            | |||||||||||||        || ||||||||||||| | ||  |||    
T  3052496 aatggccgcaaagtgaagttttacgaaggcagctccttg------------cacactttccgttgattttttccgctcaaactcaactccaaagttacgt 3052409  T
Q  200 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||  |||||| ||||||| ||||||  |||||||| ||||    
T  3052408 aaccagctctgatgtcaaatctggctgagggacaaaaggaatggtagagaaaataaagaa--actctattattctcaaagaaagtttatattatttga 3052313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 3053431 - 3053565
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaa 100  Q
    ||||||||| | |||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||||| || ||||| ||| ||||||||    
T  3053431 attgtggtggtgagtggtggttttgttggtggtgaaaacttgttaaccaagggttttcctcacttcccaaacaaaatgacgatgttagtttagcgaacaa 3053530  T
Q  101 aatggccgcaaagtgaagttttacaaaggcaactc 135  Q
    |||||||||||||||||||||||| ||||||||||    
T  3053531 aatggccgcaaagtgaagttttacgaaggcaactc 3053565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 3935138 - 3935062
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3935138 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 3935062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 21768926 - 21769130
Alignment:
Q  77 tggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngca 176  Q
    |||| |||||| ||| ||||||||| ||||  ||||||||||||||   || ||||||| |||||| ||||||||||||||||||||| |        |     
T  21768926 tggcagtgttagtttcgcgaacaaa-tggctacaaagtgaagttttgagaaagcaactccttgctcgcttgaaaactcactttccgtttatttcttctct 21769024  T
Q  177 caaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctct 276  Q
    ||||||||||||| ||||||||||||  ||||||| | ||||| | |||||||||  |||||||||||||||||||||||||||| || ||||||||||     
T  21769025 caaactcaactccaaggtatcgtaacttgctctgacgtcaaattttgctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctca 21769124  T
Q  277 aagaaa 282  Q
    ||||||    
T  21769125 aagaaa 21769130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 19789276 - 19789195
Alignment:
Q  217 aatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  19789276 aatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttga 19789195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 42678570 - 42678647
Alignment:
Q  220 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  42678570 ctggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttga 42678647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 8731176 - 8731252
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8731176 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttga 8731252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 18395497 - 18395421
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 18395421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 36464213 - 36464289
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36464213 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttga 36464289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 16496952 - 16497027
Alignment:
Q  220 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattactt 295  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16496952 ctggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattactt 16497027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 8414490 - 8414566
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  8414490 tggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttga 8414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 42680862 - 42680806
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcta 277  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctcta 42680806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 19093804 - 19093912
Alignment:
Q  177 caaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctct 276  Q
    |||||||||||  |||||||  |||| |||| |||||||||     |||||||| |||||||| |||||||||||||  |||||| |||||||||||||     
T  19093804 caaactcaactatgaggtattataactagctatgatgccaat----gctcagggtcaaaaggagaggtagagaaaat--agaaactctctaatattctca 19093897  T
Q  277 aagaaaagttatatt 291  Q
    ||||||  |||||||    
T  19093898 aagaaagtttatatt 19093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 3933130 - 3933062
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactctttgctc--acttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||||||  ||||||||||||||| ||||||||    
T  3933130 aaatggccgcaaagtgaagttttgagaaagcaactccttgctctcacttgaaaactcactctccgttga 3933062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 16534903 - 16534971
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactcttt--gctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||   |||||||||||||||||||||||||||    
T  16534903 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttga 16534971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 16630759 - 16630691
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactcttt--gctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||   |||||||||||||||||||||||||||    
T  16630759 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttga 16630691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 19787198 - 19787130
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactcttt--gctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||   |||||||||||||||||||||||||||    
T  19787198 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttga 19787130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 8733263 - 8733331
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactcttt--gctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||   |||||||||||||||||||||| ||||    
T  8733263 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccattga 8733331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 28610268 - 28610308
Alignment:
Q  221 tggctcagggacaaaaggaaagg-tagagaaaatagagaaa 260  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  28610268 tggctcagggacaaaaggaaaggttagagaaaataaagaaa 28610308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 96 - 297
Target Start/End: Original strand, 36379340 - 36379542
Alignment:
Q  96 aacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggta 195  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||       ||||||||||||||||||||||    
T  36379340 aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 36379439  T
Q  196 tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattact 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  36379440 tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattact 36379539  T
Q  295 tga 297  Q
    |||    
T  36379540 tga 36379542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 100 - 297
Target Start/End: Complemental strand, 4877297 - 4877100
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgt 199  Q
    ||||||||||||||||||||||||  || ||||| | ||||||||||||||||||||||||||||||       || |||||||||||||| ||||||||    
T  4877297 aaatggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaactccgtggtatcgt 4877198  T
Q  200 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4877197 aaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttga 4877100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 4877484 - 4877339
Alignment:
Q  22 ttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagtt 120  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| || |||  |||||||||||||||||||||||||||    
T  4877484 ttttgttggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttcacgaacaaaatggccgcaaagtgaagtt 4877385  T
Q  121 ttacaaaggcaactctttgctcacttgaaaactcactttccgttga 166  Q
    | ||||||||||||| ||||||  ||||||||||||||||||||||    
T  4877384 tcacaaaggcaactccttgctcttttgaaaactcactttccgttga 4877339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 24519153 - 24519229
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519153 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 24519229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 36379272 - 36379350
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcccaaacaaaatggc 80  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36379272 attgtggtgatgagtggtggttttgtgggtggtgaagattgttaaccaagggttttcttcacttcctaaacaaaatggc 36379350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 4879505 - 4879428
Alignment:
Q  220 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4879505 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttga 4879428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 21268120 - 21268197
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttga 21268197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 36377181 - 36377257
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaa-gaaaagttatattacttga 297  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  36377181 tggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttga 36377257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 7938990 - 7939099
Alignment:
Q  55 tttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactc 154  Q
    |||||| |||||||||||| |||  || ||||  ||||  ||||||||||| |||||||||| |||| |||| | |||||| || |||||| ||||||||    
T  7938990 tttcttaacttcccaaacataataacgatgtttgttttaagaacaaaatgggcgcaaagtgatgtttcacaaggacaactccttactcactggaaaactc 7939089  T
Q  155 actttccgtt 164  Q
    ||||||||||    
T  7939090 actttccgtt 7939099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 20642581 - 20642300
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaa 100  Q
    ||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||    
T  20642581 attgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacagtgttagtttcgcgaacaa 20642482  T
Q  101 aatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngcacaaactcaactccgaggtatcgta 200  Q
    |||||| ||||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||       ||  |||||| ||||||||||||||||    
T  20642481 aatggctgcaaagtgaagttttccacatgcaactccttgctcacttgaaaactcactttccgttgattttttcgctaaaactcgactccgaggtatcgta 20642382  T
Q  201 accagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaa 282  Q
    ||||||| || || ||| ||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||    
T  20642381 accagctttggtgtcaattcttgctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 98 - 297
Target Start/End: Complemental strand, 4531144 - 4530944
Alignment:
Q  98 caaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnn-gcacaaactcaactccgaggtat 196  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||        || ||| ||||||| ||||||||    
T  4531144 caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat 4531045  T
Q  197 cgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttg 296  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4531044 cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttg 4530945  T
Q  297 a 297  Q
    |    
T  4530944 a 4530944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 18965931 - 18966096
Alignment:
Q  2 attgtggtgataagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaa 100  Q
    ||||||||| | |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||| |||  |||||||    
T  18965931 attgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagagttttcttcacttcccaatcaaaatgacggtgttagtttcccgaacaa 18966030  T
Q  101 aatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||    
T  18966031 aatggccgcaaagtgaagttttccataggcaactccatgctcacttgaaaactcactttccgttga 18966096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 4533317 - 4533241
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4533317 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttga 4533241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 1701483 - 1701338
Alignment:
Q  99 aaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttc-cgttgannnnnnngcacaaactcaactccgaggtatc 197  Q
    |||||||| |||||||||||||||  ||| ||||||| ||| ||||||||||||| |||||  ||||||       || |||||| ||||| ||||||||    
T  1701483 aaaatggctgcaaagtgaagttttggaaaagcaactccttgttcacttgaaaacttactttttcgttgatttcttcgctcaaactgaactctgaggtatc 1701384  T
Q  198 gtaaccagctctgatgccaaatctggctcagggacaaaaggaaagg 243  Q
     |||   ||||||||| ||||||||| |||||||||||||||||||    
T  1701383 ttaatatgctctgatgtcaaatctggttcagggacaaaaggaaagg 1701338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 26306890 - 26306780
Alignment:
Q  56 ttcttcacttcccaaacaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactca 155  Q
    ||||||| |||||||||||||||  ||||||| | | ||||||||||| |||| |||||||||||| || || || | | ||| |||||||||||||| |    
T  26306890 ttcttcatttcccaaacaaaatgaaggtgttagtgtcgcgaacaaaatagccgtaaagtgaagtttcacgaacgcgatttttttctcacttgaaaactta 26306791  T
Q  156 ctttccgttga 166  Q
    |||||| ||||    
T  26306790 ctttccattga 26306780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 4531201 - 4531151
Alignment:
Q  71 acaaaatggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttt 121  Q
    |||||||| |||||||| ||| |||| ||||||||||||||||||||||||    
T  4531201 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt 4531151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 4531283 - 4531215
Alignment:
Q  100 aaatggccgcaaagtgaagttttacaaaggcaactcttt--gctcacttgaaaactcactttccgttga 166  Q
    |||||||||||||||||||||||   || ||||||| ||   |||||||||||||||||||||||||||    
T  4531283 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttga 4531215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 18966166 - 18966206
Alignment:
Q  177 caaactcaactccgaggtatcgtaaccagctctgatgccaa 217  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  18966166 caaactcaactccgaggtatcgtaaccagttctgctgccaa 18966206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 1801 - 1725
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttga 1725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 64280 - 64082
Alignment:
Q  77 tggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngca 176  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||   || |||| || ||||| ||||||||||     |||||||||       ||     
T  64280 tggcggtgttagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgct 64186  T
Q  177 caaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctct 276  Q
    |||||||||||| |||||| ||||||| ||| ||||| ||||| ||| |||| ||||||| |||||||| |||||||||||||  || |||||||||||     
T  64185 caaactcaactctgaggtagcgtaacctgctttgatgtcaaatttggatcagagacaaaatgaaaggtaaagaaaatagagaa--accctaatattctca 64088  T

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Target: scaffold0045; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 71612 - 71414
Alignment:
Q  77 tggcggtgttatttttgcgaacaaaatggccgcaaagtgaagttttacaaaggcaactctttgctcacttgaaaactcactttccgttgannnnnnngca 176  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||   || |||| || ||||| ||||||||||     |||||||||       ||     
T  71612 tggcggtgttagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgct 71518  T
Q  177 caaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctct 276  Q
    |||||||||||| |||||| ||||||| ||| ||||| ||||| ||| |||| ||||||| |||||||| |||||||||||||  || |||||||||||     
T  71517 caaactcaactctgaggtagcgtaacctgctttgatgtcaaatttggatcagagacaaaatgaaaggtaaagaaaatagagaa--accctaatattctca 71420  T

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Target: scaffold0098 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 3707 - 3783
Alignment:
Q  221 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttga 297  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||  |||||||| ||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttga 3783  T

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Target: scaffold0312 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 11402 - 11355
Alignment:
Q  220 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 267  Q
    |||| |||| |||||||| || ||||||||||||||||||||||||||    
T  11402 ctggttcagagacaaaagaaatggtagagaaaatagagaaacactcta 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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