View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_low_11 (Length: 283)
Name: NF6412_low_11
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 34771960 - 34771702
Alignment:
| Q |
10 |
attattctgaacaatgtgtttgacaggtaaaaatcacaaacaataggataatgattcactagttctccttgaatcattgaatgaaaggcatacaagattt |
109 |
Q |
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| T |
34771960 |
attattctgaacaatgtgtttgacaggaaaaaatcacaaacaataggataatgattcattagttctccttgaatcattgaatgaaaggcatacaagattt |
34771861 |
T |
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| Q |
110 |
atgcaagtgatgagttgcaccataagctagctatttctaacatatatgatttcttaccatacaagtaagaaactaccttctctaactactttcatatgaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34771860 |
atgcaagtgatgagttgcaccataagctagctatttctaacatatatgatttcttaccatacaagtaagtaactaccttctctaactactttcatatgaa |
34771761 |
T |
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| Q |
210 |
a-ccagaaac--atagaactgtcaaatacagttggcattaactaatcaaccaccataaa |
265 |
Q |
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| T |
34771760 |
acccagaaacatatagaactgtcaaatacagttggcattaactaatcaaccaccataaa |
34771702 |
T |
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