View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6412_low_12 (Length: 278)
Name: NF6412_low_12
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 46416705 - 46416961
Alignment:
| Q |
8 |
cgaataaaattacaacttcttcattttagtgagattaaaatatatttaaacctttcaaaatcataactttaaattttgct--cgtgtttagagtttagac |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46416705 |
cgaagaaaattacaacttcttcattttagtgagattaaaatatatttaaacatttcaaaatcataactttaaattttgctttcgtgtttagagtttagac |
46416804 |
T |
|
| Q |
106 |
acaaattagaccccttttgaatttagttatatgcaatgaagagtggtgatgatagcaacacccattttttaacactcttcaacattcactttttcattag |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46416805 |
acaaattagaccccttttgaatttatttatatgcaatgaagagtggtgatgatagcaacacttattttttaacactctttaacattcactttttcattag |
46416904 |
T |
|
| Q |
206 |
cttaaatcatactgagtctcacactttgaatatgatttctatttaaagtgattgatc |
262 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
46416905 |
tttaaatcacggtgagtctcacactttgaatataatttctatttaaagtaattgatc |
46416961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 6163552 - 6163621
Alignment:
| Q |
186 |
aacattcactttttcattagcttaaatcatactgagtctcacactttgaatatgatttctatttaaagtg |
255 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||| || ||||||||||||| | |||| ||||| |||||||| |
|
|
| T |
6163552 |
aacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtg |
6163621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 42474111 - 42474039
Alignment:
| Q |
183 |
ttcaacattcactttttcattagcttaaatcatactgagtctcacactttgaatatgatttctatttaaagtg |
255 |
Q |
| |
|
||||||| |||||| | |||||||||||||||| || ||||||||||||||| |||| ||| | |||||||| |
|
|
| T |
42474111 |
ttcaacactcacttcctaattagcttaaatcatagtgggtctcacactttgaaaatgaattccacttaaagtg |
42474039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University