View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_low_13 (Length: 258)
Name: NF6412_low_13
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 8866482 - 8866707
Alignment:
| Q |
19 |
taggaatcagaaatgtaaattggacaggtgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaat |
118 |
Q |
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| T |
8866482 |
taggaatcagaaatgtaaattggacaggtgatcatatcttgtgaccgttgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaat |
8866581 |
T |
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| Q |
119 |
tgaagaaagacgattttgttattgattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgg |
218 |
Q |
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| T |
8866582 |
tgaagaaagatgattttgttattgattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgg |
8866681 |
T |
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| Q |
219 |
gtccgaaattgaaagttggtttgatt |
244 |
Q |
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| T |
8866682 |
gtccgaaattgaaagttggtttgatt |
8866707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 8862622 - 8862819
Alignment:
| Q |
28 |
gaaatgtaaattggacaggtgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaattgaagaaag |
127 |
Q |
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| T |
8862622 |
gaaacgtaaactggacaggtgatcatatcttgcgactcttgggatgtttgatcatggtttctcaagtgttgtttcctaactgaagagcaattgaagaaag |
8862721 |
T |
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| Q |
128 |
acgatttt---gttattgattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtcc |
222 |
Q |
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| T |
8862722 |
acaattttgtcgttcctggttgtggaaaaaatcggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtcc |
8862819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 9126211 - 9126303
Alignment:
| Q |
33 |
gtaaattggacaggtgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaattgaagaa |
125 |
Q |
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| T |
9126211 |
gtaaattggacatgtgatcatatcttgtgacccttggaataattgatcgtagtttctcaggtgtcgtttcctaaccgaagagcagttgaagaa |
9126303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 8980037 - 8980111
Alignment:
| Q |
28 |
gaaatgtaaattggacaggtgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtgtcgtttc |
102 |
Q |
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| T |
8980037 |
gaaatgtaaattggacaggtaatcatattttgtaacttttggaatgactgatcttggtttctcaggtgttgtttc |
8980111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 9070769 - 9070965
Alignment:
| Q |
34 |
taaattggacaggtgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaattgaagaaagacgatt |
133 |
Q |
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| T |
9070769 |
taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgttgtttcctaactgaaaagcagttgaag-aagaagatt |
9070867 |
T |
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| Q |
134 |
ttgttattga-ttctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattga |
230 |
Q |
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| T |
9070868 |
ttgatatccagttcagaatcaaaccggtaaggtcgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattga |
9070965 |
T |
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