View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_low_16 (Length: 209)
Name: NF6412_low_16
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 36407756 - 36407586
Alignment:
| Q |
18 |
atatcaggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36407756 |
atatcaagaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt |
36407657 |
T |
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| Q |
118 |
taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgt |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36407656 |
taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgt |
36407586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 36412879 - 36412709
Alignment:
| Q |
18 |
atatcaggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412879 |
atatcaagaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttt |
36412780 |
T |
|
| Q |
118 |
taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgt |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412779 |
taaataaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatatgt |
36412709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 36436364 - 36436263
Alignment:
| Q |
26 |
aggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaa |
125 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
36436364 |
aggataagactggtttagtgctggatcaactgtatccaaggcccttccttctgtccatagtgtccacacctacaaatgtacaacacaatctttaaataaa |
36436265 |
T |
|
| Q |
126 |
ta |
127 |
Q |
| |
|
|| |
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|
| T |
36436264 |
ta |
36436263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 36376853 - 36376753
Alignment:
| Q |
27 |
ggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaat |
126 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
36376853 |
ggataaaactggtttagttctggatcaactatatccaaggctcttccttctgtccatagtgtccacacctacaaatgtacaacacaatctttaaataaat |
36376754 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
|
|
| T |
36376753 |
a |
36376753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 36390099 - 36390004
Alignment:
| Q |
26 |
aggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaa |
121 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||| |||||| |
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| T |
36390099 |
aggataagactggtttagtgctggatcaactgtatccaaggcccttccttctgtccatagtgtccacacctacaaatgtacaacacaatctttaaa |
36390004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 36400292 - 36400133
Alignment:
| Q |
22 |
caggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaa |
121 |
Q |
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|
|||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| | | |||||||| |
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| T |
36400292 |
cagggggataagactggtttagtgcttcatcaactatatccaaggccctttcttctgtccatacagtccacacctataaatgcaca--agagtttttaaa |
36400195 |
T |
|
| Q |
122 |
taaatatgtcatgtcatgcatcattagattgttggccaattttaaggctactctttttattatat |
186 |
Q |
| |
|
|| | || |||| || ||||||||||||| |||| |||||||||||||||||||| ||||| |
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| T |
36400194 |
tatacat---atgttatatatcattagattgtaggcctgttttaaggctactctttttaatatat |
36400133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 36419918 - 36419773
Alignment:
| Q |
36 |
tggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaatttttaaataaatatgtcatgt |
135 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||| |||| ||| |||||||| || || | |
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| T |
36419918 |
tggtttagtgcttgatcaaccatatccaaggcttttccttctgtccatagtgtccacacctacaaatgcataacataatgattaaataagta---ca--t |
36419824 |
T |
|
| Q |
136 |
catgcatcattagattgttggccaattttaaggctactctttttattatat |
186 |
Q |
| |
|
|||||| ||||| ||| | ||||||||||||||| |||||||||||||||| |
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| T |
36419823 |
catgcaccattaaattatcggccaattttaaggccactctttttattatat |
36419773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 36401573 - 36401487
Alignment:
| Q |
27 |
ggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacacctataaatgcacaacacaa |
113 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||| |
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|
| T |
36401573 |
ggataaaactggtttagttctggatcaactatatccaaggctcttccttctgtccactgtgtccatacctacaaatgcacaacacaa |
36401487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 36429884 - 36429810
Alignment:
| Q |
23 |
aggaggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacaccta |
97 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
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| T |
36429884 |
aggaggataaaactggtttagttctggatcaactatatccaaggctcttccttctgtccatagtctccacaccta |
36429810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 36371091 - 36371006
Alignment:
| Q |
26 |
aggataagactggtttagtgctggatcaacaatatccaaggctctttcttctgtccatagtgtccacaccta-taaatgcacaaca |
110 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||||||| ||| |||||||||| ||||||||| |||| |||||||||||| |
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|
| T |
36371091 |
aggataagaatggtttagtgcttgatcaaccatatccaaggcccttccttctgtccacagtgtccacgcctacaaaatgcacaaca |
36371006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 36418893 - 36418856
Alignment:
| Q |
23 |
aggaggataagactggtttagtgctggatcaacaatat |
60 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |
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|
| T |
36418893 |
aggaagataagactggtttagtgctggatcaaccatat |
36418856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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