View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_low_2 (Length: 591)
Name: NF6412_low_2
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 530876 - 530582
Alignment:
| Q |
1 |
tattaatgtttggtacacaaatcaaaacataataacatatggttttaaatccattaaattaaatttaaagtagtgtgttttgt-acatttaataaaaacc |
99 |
Q |
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| T |
530876 |
tattaatgtttggtacacaaatcaaaacataataacatatggtcttaaatccattaaattaaatttaaagtagtgtgttttgttacatttaataaaaacc |
530777 |
T |
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| Q |
100 |
atagtgaaaataatattttgtgacacatcataacaaacacactaatctatattcattttctacacaaaggttttgtttgttaatagcaaattttgagcta |
199 |
Q |
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| T |
530776 |
atagtgaaaataatattttatgacacatcataacaaacacactaatctatattcattttctacacaaaggttttgtttgttaatagcaaattttgagcta |
530677 |
T |
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| Q |
200 |
tcatctatgttcatcggttatcaattaatttatcatctatatttgaccacatagccaaatggaccatactttagaatttcatattagatggactc |
294 |
Q |
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| T |
530676 |
tcatctatgttcatcggttatcaattaatttatcatctatatttgaccacatagccaaatggaccatactttagaacttcatattagatgaactc |
530582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 530496 - 530417
Alignment:
| Q |
375 |
actattttgggttttacaacactcacacaaactcttgtgaaataatggatcagtcattgtaggatgatgtgagtaatatt |
454 |
Q |
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| T |
530496 |
actattttgggttttacaacactcacacaaactcttgtgaaataatggatcagtcattgtaggatgatgtgagtaatatt |
530417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 530335 - 530293
Alignment:
| Q |
535 |
ccttagtataatcgaagagaatagatttattgttggccatgat |
577 |
Q |
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| T |
530335 |
ccttagtataatcgaagagaatagatttattgttggccatgat |
530293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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