View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_low_8 (Length: 327)
Name: NF6412_low_8
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 27679448 - 27679143
Alignment:
| Q |
13 |
gaaccacatatgaaggcggtccacggtagttggagttaagatctagtataaaaacattgaatggaattattttaattcaacaatgttaatcaatggataa |
112 |
Q |
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| T |
27679448 |
gaaccacatatgaaggcggtccacggtagttggagttaagatctagtataaaaacattgaatggaattattttaattcaacaatgttaatcaaaggataa |
27679349 |
T |
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| Q |
113 |
ttctaatttttgttcaagnnnnnnnnn----cttaacttcaa---aacattaacttgatttacacaggtacatagagagagcagggttactaggatgttt |
205 |
Q |
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| T |
27679348 |
ttctaatttttgttcaagttttttttttcttcttaacttcaataaaacattaacttgatttacacaggtacatagagagagcagggttactaggatgttt |
27679249 |
T |
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| Q |
206 |
gagttggaggtatccaagtacattaaagcaaagtgaactcaaatgggctgagaaaggaccaaggaggaatggtgacaaaggctatggtcaccaatcaaga |
305 |
Q |
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| T |
27679248 |
gagttggaggtatccaagtacattaaagcaaagtgaactcaaatgggcagagaaaggaccaaggaggaatggtgacaaaggctatggtcaccaatcaaga |
27679149 |
T |
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| Q |
306 |
ccaaca |
311 |
Q |
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|||||| |
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| T |
27679148 |
ccaaca |
27679143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 27673943 - 27673895
Alignment:
| Q |
224 |
tacattaaagcaaagtgaactcaaatgggctgagaaaggaccaaggagg |
272 |
Q |
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| T |
27673943 |
tacattaaagcaaactgaactcaaatgggctgagaaaagaccaaggagg |
27673895 |
T |
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