View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6412_low_9 (Length: 320)
Name: NF6412_low_9
Description: NF6412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6412_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 28621561 - 28621847
Alignment:
| Q |
16 |
caaataacaaagcagcaagtacagccaccgtcaaaggttgtgaatcaataataacctgcaatatatccatgctagatagtcaaaacaagcaacaattcat |
115 |
Q |
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| T |
28621561 |
caaataacaaagcagcaagtacagccaccgtcaaaggttgtgaatcaataataacctgcgatatatccatgctagatagtcaaaacaagcaacaattcat |
28621660 |
T |
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| Q |
116 |
tccctcactgcaatctagaatccgaatcaacacaaagttgactcaaagcaacttttcctctaatccatttctatcaatatgagacacaaacaacattata |
215 |
Q |
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| T |
28621661 |
tccctcactgcaatctagaatccgaatcaacacaaagttgactcaaagcaacttttcctctaatccatttctatcaatatgagacacaaacaacattata |
28621760 |
T |
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| Q |
216 |
cagagtaatttcaccagtaacaacataaaactacgccatccaatgtgcactaaataaggactatattgtagtctctagcaaagacac |
302 |
Q |
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| T |
28621761 |
cagagtaatttcaccagtaacaacataaaactaagccatccaatgtgcaataaataaggactatactgtagtctctagtaaagacac |
28621847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 28617265 - 28617364
Alignment:
| Q |
16 |
caaataacaaagcagcaagtacagccaccgtcaaaggttgtgaatcaataataacctgcaatatatccatgctagatagtcaaaacaagcaacaattcat |
115 |
Q |
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| T |
28617265 |
caaatagcaaagccgcaagtacagccactgtcaaaggttgtgaatcaataataacctgcgatacatccatgctagatagtcaaaacaagcaaccattcat |
28617364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 28617376 - 28617450
Alignment:
| Q |
136 |
tccgaatcaacacaaagttgactcaaagcaacttttcctctaatccatttctatcaatatgagacacaaacaacatt |
212 |
Q |
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| T |
28617376 |
tccaaatcaacacaaatttaactcaa--caacttttcctctagttcaattctatcaatatgacacacatacagcatt |
28617450 |
T |
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