View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_high_2 (Length: 615)
Name: NF6413_high_2
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 9471352 - 9471800
Alignment:
| Q |
11 |
catcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggatctacaacacagacacctgacacgacagagacaccgtggcat |
110 |
Q |
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| T |
9471352 |
catcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggatctataacgcagacacctgacacgacagagacaccgtggcat |
9471451 |
T |
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| Q |
111 |
gtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctgataatgtggcgtcggacttctgtcgaacactaaa |
210 |
Q |
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| T |
9471452 |
gtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctgataatgtggcgtcggacttctgtcgaacactaaa |
9471551 |
T |
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| Q |
211 |
cattccaataatctgaattgtcaatgctacataatttctgttttggttattaaaattgcaaaattcaaacacttgtctcagtatctttgtgttttcttat |
310 |
Q |
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| T |
9471552 |
cattccaataatctgaattgtcaatgctacataatttctgttttggtttttaaaattgcaaaattcaaacacttgtctcagtatctttgtgttttcttat |
9471651 |
T |
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| Q |
311 |
ggtcaaccaatccagaaattcaattcacactaaagggtctatgaaccaaaccagaaacttaaatcatcaattcctcacctagtgatgggtcgatgaaccg |
410 |
Q |
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| T |
9471652 |
ggtcaaccaatccagaaattcaaatcacactaaagggtctatgaaccaaaccagaaacttaaatcatcaattcctcacctagtgatgggtcgatgaaccg |
9471751 |
T |
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| Q |
411 |
gatccgcttgtttcttctcacaaacattatttctcctgtgatgcaccca |
459 |
Q |
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| T |
9471752 |
gatccgcttgtttcttctcacaaacattatttctcctgtgatgcaccca |
9471800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 519 - 597
Target Start/End: Original strand, 9471860 - 9471938
Alignment:
| Q |
519 |
gaagggttcatataatctgatcaagaatttactctgacaatgccctcttgttaacaacacaaggataaggacgtccttc |
597 |
Q |
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| T |
9471860 |
gaagggttcatataatctgatcaagaatttactctgacaatgccctcttgttaacaacacaaggataaggacgtccttc |
9471938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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