View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_1 (Length: 836)
Name: NF6413_low_1
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 28933097 - 28933545
Alignment:
| Q |
1 |
ttgcctataatgtttctccattaa----gatatcttctctacctttatatttaggtgaaaagacatcctgtaaggaaaaagtttgatgaggtatgttcta |
96 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28933097 |
ttgcctataatgtttctccattaattaagatatcttctctacctt-acatttaggtgaaaagacatcctgtaaagaaaaagtttgatgaggtatgttcta |
28933195 |
T |
|
| Q |
97 |
ctcctgaagtttttattctactccaacaattctatttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933196 |
ctcctgaagtttttattctactccaacaattctatttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatatt |
28933295 |
T |
|
| Q |
197 |
ggtgttgtgtgctaattcatgattgtggatagaaaaagtttattttgtcatctaactttcgaatcaccttttattggcctggtattttacatgtctaatg |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933296 |
ggtgttgtgtgctaattcatgattgtggatagaaaatttttattttgtcatctaactttcgaatcaccttttattggcctggtattttacatgtctaatg |
28933395 |
T |
|
| Q |
297 |
aaattggcagatggcagaggacttgctggaaatttatgacacaagtgacaacagatttattcacaaattacaggagtatgtgtcagtttcccttcttctt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
28933396 |
aaattggcagatggcagaggacttgctggaaatttatgacacaagtgacaacagatttattcacaaattacaggagtatgtctcagtttctcttcttctt |
28933495 |
T |
|
| Q |
397 |
agaattacgaagtgactggttattataaatatggttgctgcaatatttgc |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933496 |
agaattacgaagtgactggttattataaatatggttgctgcaatatttgc |
28933545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 492 - 826
Target Start/End: Original strand, 28933543 - 28933874
Alignment:
| Q |
492 |
tgcccagttataatctaaatatctgtaacatctgatgcaaattatagtgctaatctattaagccctgacactctaaaattgcccaagtatcagtttcata |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28933543 |
tgcccagttataatctaaatatctgtaacatctgatgcaaattatagtgctaatctattaagccctgacactctaaaattgcctaagtatcagtttcata |
28933642 |
T |
|
| Q |
592 |
cccgtatcttgtactgatattcatttgaatattctagaagggtgtgtatccttgagtatcctccaattttcttattttttaaagaaaatattaattgatg |
691 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933643 |
cccgtatctagtaccgatattcatttgaatattctagaagggtgtgtatccttgagtatcctccaattttcttattttttaaagaaaatattaattgatg |
28933742 |
T |
|
| Q |
692 |
atattgagatctatgtaacactgggactgatacaaacacgagacatggcaccgacacattgacactgtaataattttagaatatgaaataattgaatgta |
791 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933743 |
atattgagatct---taacactgggactgatacaaacacgagacatggcaccgacacattgacactgtaataattttagaatatgaaataattgaatgta |
28933839 |
T |
|
| Q |
792 |
accacattcgttagtgttgggttggtgtctgtgct |
826 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
28933840 |
accacattcgtcagtgttgggttggtgtctgtgct |
28933874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 131 - 308
Target Start/End: Original strand, 10187513 - 10187691
Alignment:
| Q |
131 |
tttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgttgtgtgc--taattcatgattgtggatag |
228 |
Q |
| |
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||||| ||||||||||||||| ||||| | |||||||| ||| |||| || ||| |||||||| |||||||| ||||| |||| |||| | |||| ||| |
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| T |
10187513 |
tttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaaaaatgttggtgttctgtgcgctaatccatggtcgtggttag |
10187612 |
T |
|
| Q |
229 |
aaaaagtttattttgtcatctaactttcgaatcaccttttattggcctggtattttacatgtctaatgaaattggcagat |
308 |
Q |
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| T |
10187613 |
agaaagttaatttt-tcgtctatcttctgaatcaccttttattggcttggtattttacatgtttaatgaaactggcagat |
10187691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10187360 - 10187411
Alignment:
| Q |
1 |
ttgcctataatgtttctccattaagatatcttctctacctttatatttaggt |
52 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
10187360 |
ttgcctacaatgtctctccattaagatatcttctctaccttttcatttaggt |
10187411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 84 - 445
Target Start/End: Complemental strand, 35120849 - 35120501
Alignment:
| Q |
84 |
gaggtatgttctactcctgaagtttttattctactccaacaattctat-ttctacctgcattttgttctatattatgtattctgcaggtttcctcaggcc |
182 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||| |||| ||| ||||| || |
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| T |
35120849 |
gaggtatattctactcctgatgtttttattctactgtaacaattctttcttctacatgcattttgttctatattatgtatt-tgcatgttgtctcagacc |
35120751 |
T |
|
| Q |
183 |
ccataaaaaatattggtgttgtgtgctaattcatgattgtggatagaaaaagtttattttgtcatctaactttcgaatcaccttttattggcctggtatt |
282 |
Q |
| |
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|| |||||||| ||||||||| ||||| |||||| ||| | |||||| ||||||||||| |||||||||||| ||||| ||||||| |
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| T |
35120750 |
ccttaaaaaatgttggtgttgg--------tcatg------gatagagaaaatatatttt-tcatctaacttctgaatcacctttttttggcttggtatt |
35120666 |
T |
|
| Q |
283 |
ttacatgtctaatgaaattggcagatggcagaggacttgctggaaatttatgacacaagtgacaacagatttattcacaaattacaggagtatg--tgtc |
380 |
Q |
| |
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|||||| | ||||||||||||||||||| ||| ||||||| ||| | ||| |||||||||||| ||||| ||||| |||||||||||| | || |
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| T |
35120665 |
ttacatttttaatgaaattggcagatggtagatgacttgcgggatagaattgaaacaagtgacaaccccattattaacaaaatacaggagtatgtctctc |
35120566 |
T |
|
| Q |
381 |
agtttcccttcttcttagaattacgaagtgactggttattataaatatggttgctgcaatatttg |
445 |
Q |
| |
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|||||| ||| ||||||||||||| |||| ||| |||||| |||||||| ||| || |||||||| |
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| T |
35120565 |
agtttctcttgttcttagaattaccaagtcactagttattgtaaatatgtttggtgaaatatttg |
35120501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35120965 - 35120900
Alignment:
| Q |
1 |
ttgcctataatgtttctccattaagatatcttctctacctttatatttaggtgaaaagacatcctg |
66 |
Q |
| |
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||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
35120965 |
ttgcctacaatatctctccattaagatatcttctctaccttttcatttaggtgaaaagccatcctg |
35120900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 757 - 798
Target Start/End: Original strand, 39828472 - 39828513
Alignment:
| Q |
757 |
tgtaataattttagaatatgaaataattgaatgtaaccacat |
798 |
Q |
| |
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|
| T |
39828472 |
tgtaataatttgagaatatgaaataattgaatgtaaccacat |
39828513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 798
Target Start/End: Complemental strand, 26462716 - 26462657
Alignment:
| Q |
740 |
caccgacacattgacactg-taataattttagaatatgaaataattgaatgtaaccacat |
798 |
Q |
| |
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||||||||| | ||||||| ||||||||| |||| ||||||||||||||||||| ||||| |
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|
| T |
26462716 |
caccgacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacat |
26462657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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