View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_11 (Length: 305)
Name: NF6413_low_11
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_11 |
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| [»] scaffold0576 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 31341270 - 31341558
Alignment:
| Q |
1 |
ttctgttttgcagagtgctaaagtttggatatctgcaacattttgagatatactactagtctagatatatcaaagtcgttctttactttttaagttttgg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31341270 |
ttctgttttgcagagggctaaagtttggatatctacaacgtttggagatacactactattccagatatatcaaagtcgttctttactttttaagttttgg |
31341369 |
T |
|
| Q |
101 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatttcttattttcctgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31341370 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatttcttattttcctgt |
31341469 |
T |
|
| Q |
201 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31341470 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
31341558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 8048 - 7760
Alignment:
| Q |
1 |
ttctgttttgcagagtgctaaagtttggatatctgcaacattttgagatatactactagtctagatatatcaaagtcgttctttactttttaagttttgg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8048 |
ttctgttttgcagagggctaaagtttggatatctacaacgtttggagatacaatactagtccagatatatcaaagtcgttctttactttttaagttttgg |
7949 |
T |
|
| Q |
101 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatttcttattttcctgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7948 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatctcttattttcctgt |
7849 |
T |
|
| Q |
201 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7848 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
7760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 15363277 - 15362989
Alignment:
| Q |
1 |
ttctgttttgcagagtgctaaagtttggatatctgcaacattttgagatatactactagtctagatatatcaaagtcgttctttactttttaagttttgg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
15363277 |
ttctgttttgcagagggctaaagtttggatatctacaacgtttggagatacaatactagtccagatatatcaaagtcgttctttactttttaagttttgg |
15363178 |
T |
|
| Q |
101 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatttcttattttcctgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15363177 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatctcttattttcctgt |
15363078 |
T |
|
| Q |
201 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15363077 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
15362989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 7406292 - 7406580
Alignment:
| Q |
1 |
ttctgttttgcagagtgctaaagtttggatatctgcaacattttgagatatactactagtctagatatatcaaagtcgttctttactttttaagttttgg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7406292 |
ttctgttttgcagagggctaaagtttggatatctacaacgtttggagatacaatactagtccagatatatcaaagtcgttctttactttttaagttttgg |
7406391 |
T |
|
| Q |
101 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatttcttattttcctgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7406392 |
gctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgattatgagtatttcttgatctcttattttcctgt |
7406491 |
T |
|
| Q |
201 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7406492 |
ttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
7406580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 7394920 - 7395009
Alignment:
| Q |
200 |
tttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7394920 |
tttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
7395009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 1655892 - 1655826
Alignment:
| Q |
223 |
ctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1655892 |
ctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggtttgatttagttcttg |
1655826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 17303489 - 17303375
Alignment:
| Q |
175 |
tatttcttgatttcttattttcctgtttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggt |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17303489 |
tatttcttgatttcttattttcctttttggtgctccaagagaggtgatctattaatgttgagtattccttctggttagttttgtctcttgatgttgtggt |
17303390 |
T |
|
| Q |
275 |
ttgatttagttcttg |
289 |
Q |
| |
|
||||||||||||||| |
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|
| T |
17303389 |
ttgatttagttcttg |
17303375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17303631 - 17303497
Alignment:
| Q |
1 |
ttctgttttgcagagtgctaaagtttggatatctgcaacattttgagatatactactagtctagatatatcaaagtcgttc-tttactttttaagttttg |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| |||||| |||| ||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
17303631 |
ttctgttttgcagagggctaaagtttggatatctacaacgtttggagatacacta---gtccagatatatcaaagtcgttcctttactttttaagttttg |
17303535 |
T |
|
| Q |
100 |
ggctttgttcttaagacatgctgcagattggattgtga |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17303534 |
ggctttgttcttaagacatgctgcagattggattgtga |
17303497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 17242227 - 17242148
Alignment:
| Q |
74 |
agtcgttctttactttttaagttttgggctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaat |
156 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
17242227 |
agtcgttctttactttttaagattattgctttgtttttaagacatga---agattggattgtgaatctatttttcttttcaat |
17242148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 17253244 - 17253170
Alignment:
| Q |
91 |
taagttttgggctttgttcttaagacatgctgcagattggattgtgaatctatttttctgttcaatatttctgttgat |
168 |
Q |
| |
|
|||| |||||| |||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||| ||||| |
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|
| T |
17253244 |
taagatttgggatttgttcttatgacatgc---agattggattgtgaatctatttttattttcaatatttctattgat |
17253170 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4684775 - 4684861
Alignment:
| Q |
1 |
ttctgttttgcagagtgctaaagtttggatatctgcaacattttgagatatactactagtctagatatatcaaagtcgttctttact |
87 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4684775 |
ttctgttttgcagagggctaaagtttggatatctacaacgtttggagatacactactagtccagatatatcaaagtcgttctttact |
4684861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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