View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_12 (Length: 301)
Name: NF6413_low_12
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 142 - 286
Target Start/End: Original strand, 35407943 - 35408084
Alignment:
| Q |
142 |
ttttgattttttagaggcattaatacgtttgatagaaagtattaatacatgttgatgcgtgtaaaatcaaattttgnnnnnnnnngttgaaagaatcaac |
241 |
Q |
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| T |
35407943 |
ttttgattttttagaggcattaatacgtttgatagaaagtattaatacatgttgatgcgtgtaaaatcaaatttt---ttttttgtttgaaagaatcaac |
35408039 |
T |
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| Q |
242 |
tttgattttgttttccttataatttactaataagagttttattag |
286 |
Q |
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| T |
35408040 |
tttgattttgttttccttataatttactaataagagttttattag |
35408084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 35407852 - 35407891
Alignment:
| Q |
51 |
tcaaaattggcgttgaatgtgagtatactatgcttttatt |
90 |
Q |
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| T |
35407852 |
tcaaaattggcgttgaatgtgagtatactatgcttttatt |
35407891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 35407770 - 35407803
Alignment:
| Q |
22 |
ttacgtatataactccagaatcctttttctcaaa |
55 |
Q |
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| T |
35407770 |
ttacgtatataactccagcatcctttttctcaaa |
35407803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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