View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6413_low_13 (Length: 288)

Name: NF6413_low_13
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6413_low_13
NF6413_low_13
[»] chr4 (8 HSPs)
chr4 (9-275)||(42711168-42711434)
chr4 (6-279)||(14687162-14687435)
chr4 (6-279)||(15349234-15349501)
chr4 (9-162)||(11498006-11498159)
chr4 (9-149)||(18290701-18290841)
chr4 (9-152)||(45240250-45240394)
chr4 (9-170)||(10629410-10629568)
chr4 (43-152)||(11918125-11918233)
[»] chr7 (14 HSPs)
chr7 (6-279)||(9729305-9729578)
chr7 (6-279)||(9581453-9581726)
chr7 (8-279)||(16327159-16327430)
chr7 (9-279)||(540152-540416)
chr7 (9-279)||(4311279-4311548)
chr7 (8-279)||(8783481-8783752)
chr7 (110-279)||(14223144-14223313)
chr7 (11-153)||(4462102-4462244)
chr7 (9-170)||(23513729-23513890)
chr7 (11-170)||(5395800-5395959)
chr7 (9-170)||(10439731-10439892)
chr7 (9-149)||(12565684-12565824)
chr7 (9-152)||(13741099-13741242)
chr7 (6-47)||(14223105-14223146)
[»] chr5 (7 HSPs)
chr5 (6-279)||(23712097-23712370)
chr5 (9-152)||(20446238-20446381)
chr5 (9-149)||(18487456-18487596)
chr5 (9-170)||(21282303-21282465)
chr5 (9-170)||(23602033-23602191)
chr5 (9-170)||(24939193-24939351)
chr5 (9-146)||(24218516-24218650)
[»] chr3 (11 HSPs)
chr3 (6-282)||(12777894-12778170)
chr3 (8-279)||(15024254-15024525)
chr3 (9-279)||(6813419-6813683)
chr3 (11-152)||(20562027-20562168)
chr3 (11-152)||(20564335-20564476)
chr3 (9-170)||(13090200-13090358)
chr3 (11-152)||(20559719-20559860)
chr3 (9-170)||(9362350-9362508)
chr3 (9-170)||(13096373-13096531)
chr3 (9-71)||(3246906-3246968)
chr3 (9-91)||(20153516-20153598)
[»] scaffold0035 (1 HSPs)
scaffold0035 (6-279)||(51943-52216)
[»] chr8 (4 HSPs)
chr8 (6-279)||(20000852-20001122)
chr8 (9-152)||(20040462-20040605)
chr8 (9-170)||(21855169-21855327)
chr8 (9-152)||(17619422-17619562)
[»] scaffold0090 (1 HSPs)
scaffold0090 (6-279)||(29312-29585)
[»] chr1 (3 HSPs)
chr1 (9-279)||(27045424-27045688)
chr1 (9-101)||(21785836-21785925)
chr1 (59-152)||(22626469-22626562)
[»] scaffold0485 (1 HSPs)
scaffold0485 (8-279)||(11296-11568)
[»] chr6 (9 HSPs)
chr6 (9-279)||(22062904-22063168)
chr6 (8-279)||(19586966-19587222)
chr6 (9-210)||(23519144-23519345)
chr6 (9-170)||(18188962-18189123)
chr6 (9-152)||(17818194-17818337)
chr6 (9-108)||(18852742-18852838)
chr6 (23-70)||(29685293-29685340)
chr6 (10-67)||(24390266-24390326)
chr6 (23-67)||(18977624-18977668)
[»] chr2 (2 HSPs)
chr2 (8-200)||(25339498-25339690)
chr2 (26-189)||(24500971-24501134)
[»] scaffold0566 (1 HSPs)
scaffold0566 (9-162)||(1275-1428)
[»] scaffold0222 (1 HSPs)
scaffold0222 (26-149)||(18509-18632)
[»] scaffold0220 (1 HSPs)
scaffold0220 (44-170)||(11741-11867)
[»] scaffold0113 (1 HSPs)
scaffold0113 (9-170)||(38026-38184)
[»] scaffold0026 (1 HSPs)
scaffold0026 (59-168)||(17029-17138)
[»] scaffold0012 (3 HSPs)
scaffold0012 (9-102)||(12837-12927)
scaffold0012 (9-102)||(8728-8818)
scaffold0012 (9-53)||(8665-8709)
[»] scaffold1184 (1 HSPs)
scaffold1184 (33-67)||(537-571)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 42711168 - 42711434
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  42711168 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 42711267  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42711268 acaattagttctaataattctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 42711367  T
Q  209 taattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtga 275  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42711368 taattttcatctatcctcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 14687162 - 14687435
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||    
T  14687162 catcatcatcatcattatcttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataat 14687261  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  14687262 caaacaattagctctaataattctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttaga 14687361  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||| || || | |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  14687362 taatagttctcctctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 15349234 - 15349501
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  15349234 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 15349333  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||    
T  15349334 caaacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttaga 15349427  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||| || |||| |||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||    
T  15349428 taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 11498006 - 11498159
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | ||||||||||||||| |||||    
T  11498006 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaa 11498105  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatg 162  Q
     |||||| |   | | | |||||| |||||||||||||||| || | |||||||    
T  11498106 gcaattaacataattgactctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 18290841 - 18290701
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||||||||||| |||||    
T  18290841 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaa 18290742  T
Q  109 acaattagctctaataattctccattcatattggtaattgt 149  Q
      |||| ||  || | | | |||| ||||||||||||||||    
T  18290741 taaatttgcattattgaatttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 45240250 - 45240394
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |  ||||| |||||||| |||||    
T  45240250 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaa 45240349  T
Q  109 acaa-ttagctctaataattctccattcatattggtaattgtgag 152  Q
     ||| |||||  || | | |||||| |||||||||||||||||||    
T  45240350 gcaatttagcgttattgactctccactcatattggtaattgtgag 45240394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 10629568 - 10629410
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||| ||| |||||||||||| ||||||||||||||||| |||||    
T  10629568 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaa 10629472  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | |||||| ||||||||| ||||||||| | || ||||| ||||||    
T  10629471 gaaattagcattattgactctccactcatattgggaattgtgagaagggccatggattctaa 10629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  43 accaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaacaattagctctaataattctccattcatattgg 142  Q
    ||||||||||| ||| ||||||||||||| ||| ||||| ||||| | |||||||||||| |||||| ||||||| ||| | | | |||| |||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  143 taattgtgag 152  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 9729578 - 9729305
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9729578 catcatcatcaccatcatcttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataat 9729479  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9729478 caaacaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 9729379  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  9729378 taataattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 9581726 - 9581453
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  9581726 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataat 9581627  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581626 caaacaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 9581527  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  9581526 taataattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 16327159 - 16327430
Alignment:
Q  8 tcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatca 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||    
T  16327159 tcatcaccaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtca 16327258  T
Q  108 aacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||    
T  16327259 aacaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagata 16327358  T
Q  208 ataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||| ||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  16327359 atagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 540152 - 540416
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  540152 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 540251  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| |||||    
T  540252 acaattagctttaatgattctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataa 540345  T
Q  209 taattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    || || |||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  540346 tagttctcatctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 4311548 - 4311279
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  4311548 catcatcaccatcatcttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 4311449  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||||||||||| | |||||    
T  4311448 acaattagctctaataattctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataa 4311349  T
Q  209 taattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    || ||  | | |||||||||||||  ||||||||||||| ||| |||| || ||| |||||| ||||||||    
T  4311348 tagttcccctctatcctcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 8783481 - 8783752
Alignment:
Q  8 tcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatca 107  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||    
T  8783481 tcatcaccaccatgatcttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatca 8783580  T
Q  108 aacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggata 207  Q
    || ||||| || |||||||||||| |||||||| ||||||||||||| || |||||||| ||||||| | ||||||||||||||||||||||| | ||||    
T  8783581 aaaaattatctgtaataattctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagata 8783680  T
Q  208 ataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||| ||  | | ||||| |||||||| ||||||||||||||||| |||| || |||||||||| ||||||||    
T  8783681 atagttcccctctatccccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 110 - 279
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  110 caattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataat 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  210 aattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    | || || | | |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 4462102 - 4462244
Alignment:
Q  11 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaac 110  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||   | |||||||||||| |||||||    
T  4462102 tcatcaccatcatcatgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaac 4462201  T
Q  111 aattagctctaataattctccattcatattggtaattgtgagt 153  Q
    ||| ||||||||| ||| || | |||||||||| |||||||||    
T  4462202 aatgagctctaatgattttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 23513890 - 23513729
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  23513890 catcatcaccatcattgtgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaa 23513791  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | |||||| |||||| |||||||||||| | || ||||| ||||||    
T  23513790 gtaattagcattattgactctccactcatataggtaattgtgagaagggccatggattctaa 23513729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 5395959 - 5395800
Alignment:
Q  11 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaac 110  Q
    |||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||      
T  5395959 tcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaaga 5395860  T
Q  111 aattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
    |||||||  || | |  ||||| |||| ||||||||||| || | |||| ||| ||||||    
T  5395859 aattagcattattgacgctccactcattttggtaattgttagaagggtcgtggattctaa 5395800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 10439731 - 10439892
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| ||||||||||||||||| |||||    
T  10439731 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaa 10439830  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      ||||| |  || | | |||||| ||||||||||||||||||| | ||  |||||||||||    
T  10439831 gaaattatcattattgactctccactcatattggtaattgtgagaagggctatgggttctaa 10439892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 12565824 - 12565684
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  |||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| ||||||||||||  ||| |||||    
T  12565824 catcatcaccatcattgtgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaa 12565725  T
Q  109 acaattagctctaataattctccattcatattggtaattgt 149  Q
      |||||||  || | | |||||| ||||||||||||||||    
T  12565724 gaaattagcattattgactctccactcatattggtaattgt 12565684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 13741242 - 13741099
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||   | ||||| |||||||||| |||||||||||| |||||||||||||| |||||    
T  13741242 catcatcaccatcattgtgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaa 13741143  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgag 152  Q
     |||||| |  || | | |||||| |||||||||||||||||||    
T  13741142 gcaattatcattattgactctccactcatattggtaattgtgag 13741099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 14223105 - 14223146
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaa 47  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14223105 catcatcatcaccatcatcttgtacctgtgggttagtaccaa 14223146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 23712097 - 23712370
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  23712097 catcatcatcaccatcatcttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 23712196  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23712197 caaaaaattagttctaataatcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 23712296  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  23712297 taataattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 20446238 - 20446381
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  20446238 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 20446337  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgag 152  Q
      |||||||  || | | |||||| |||||||||||||||||||    
T  20446338 gaaattagcattattgactctccactcatattggtaattgtgag 20446381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 18487456 - 18487596
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| ||||||||||||||||| |||||    
T  18487456 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaa 18487555  T
Q  109 acaattagctctaataattctccattcatattggtaattgt 149  Q
      |||||||  || | | |||||| ||||||||||||||||    
T  18487556 gaaattagcattattgactctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 21282303 - 21282465
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |  ||||| |||||||| |||||    
T  21282303 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaa 21282402  T
Q  109 acaa-ttagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
     ||| |||||  || | | |||||| ||||||||||||||||||| | ||| |||| ||||||    
T  21282403 gcaatttagcgttattgactctccactcatattggtaattgtgagaagggttatggattctaa 21282465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 23602033 - 23602191
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  23602033 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 23602129  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | || ||| ||||||||| ||||||||| | || ||||| ||||||    
T  23602130 gaaattagcattattgactcgccactcatattgggaattgtgagaaaggccatggattctaa 23602191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 24939351 - 24939193
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||   || ||||| ||||||| || ||||||||| ||||||||||||||||| |||||    
T  24939351 catcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaa 24939255  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | || ||| ||||||||| ||||||||| | || ||||| ||||||    
T  24939254 gaaattagcattattgactcgccactcatattgggaattgtgagaagggccatggattctaa 24939193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 24218650 - 24218516
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||| ||||||||  ||||| ||||||||||| |||||||||    | ||||| |||| ||||||||||||||| ||||||||||||||||| |||||    
T  24218650 catcattaccatcattgtgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaa 24218554  T
Q  109 acaattagctctaataattctccattcatattggtaat 146  Q
      |||||||  || | | |||||| |||||||||||||    
T  24218553 gaaattagcattattgactctccactcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 12777894 - 12778170
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||    
T  12777894 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataat 12777993  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  12777994 caaacaattagttctaataattctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttgga 12778093  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgatgtc 282  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  12778094 taataattttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 15024525 - 15024254
Alignment:
Q  8 tcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatca 107  Q
    |||||| | |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| || |    
T  15024525 tcatcacctccatcatcttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataa 15024426  T
Q  108 aacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggata 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||    
T  15024425 aacaattagctctattaattctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagata 15024326  T
Q  208 ataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||| |   | | |||||||||||||| ||||||||||||||||| |||| |  |||||||||||||||||||    
T  15024325 atagtacccctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 6813683 - 6813419
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  6813683 catcattaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 6813584  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||| || ||||||| ||||||||      |||||| |||||| |||||    
T  6813583 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataa 6813490  T
Q  209 taattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    || || |||| |||||||||||||| |||||||| |||||||  |||| ||||||||||||||||||||||    
T  6813489 tagttctcatctatcctcttgatcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 20562168 - 20562027
Alignment:
Q  11 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaac 110  Q
    |||||||||||||  ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||||||||||||||||| |||||      
T  20562168 tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20562069  T
Q  111 aattagctctaataattctccattcatattggtaattgtgag 152  Q
    ||||||   || | | |||||| |||||||||||||||||||    
T  20562068 aattagtagtattgactctccactcatattggtaattgtgag 20562027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 20564476 - 20564335
Alignment:
Q  11 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaac 110  Q
    |||||||||||||  ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||||||||||||||||| |||||      
T  20564476 tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20564377  T
Q  111 aattagctctaataattctccattcatattggtaattgtgag 152  Q
    ||||||   || | | |||||| |||||||||||||||||||    
T  20564376 aattagtagtattgactctccactcatattggtaattgtgag 20564335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 13090200 - 13090358
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  13090200 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 13090296  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | || ||| ||||||||| ||||||||| | || ||||| ||||||    
T  13090297 gaaattagcattattgactcaccactcatattgggaattgtgagaagggccatggattctaa 13090358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 20559860 - 20559719
Alignment:
Q  11 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaac 110  Q
    |||||||||||||  |||| |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||||||||||||||||| |||||      
T  20559860 tcatcaccatcattgtgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20559761  T
Q  111 aattagctctaataattctccattcatattggtaattgtgag 152  Q
    ||||||   || | | |||||| |||||||||||||||||||    
T  20559760 aattagtagtattgactctccactcatattggtaattgtgag 20559719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 9362350 - 9362508
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| | ||||||||||||||| |||||    
T  9362350 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaa 9362446  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | |||||| |||||||||  |||||||| | || ||||| ||||||    
T  9362447 gaaattagcattattgactctccactcatattggggattgtgagaagggccatggattctaa 9362508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 13096531 - 13096373
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  |||||||||||||||||  |||||||||   | ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  13096531 catcatcaccatcattgtgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 13096435  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      ||||||   || | | |||||| |||| |||| ||||||||| | || ||||| ||||||    
T  13096434 gaaattagaattattgactctccactcatgttgggaattgtgagaagggccatggattctaa 13096373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 3246906 - 3246968
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacct 71  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  3246906 catcatcaccatcatcttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 20153598 - 20153516
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaa 91  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||  || ||||| ||||||||| |||||| ||| ||||||    
T  20153598 catcatcaccatcattgtgtacctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctgaa 20153516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 51943 - 52216
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||  |    
T  51943 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagt 52042  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||| ||    
T  52043 caaacaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttaga 52142  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||| ||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  52143 taatagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 20001122 - 20000852
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  20001122 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataat 20001023  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||| ||    
T  20001022 caaacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttaga 20000923  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||| || |||| |||||||||||||| ||||||||||||||||| |||   |||||||||||||||||||||    
T  20000922 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 20040462 - 20040605
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| ||||||||||||||||| |||||    
T  20040462 catcatcaccatcattgtgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaa 20040561  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgag 152  Q
      ||||||   || | | |||||| |||||||||||||||||||    
T  20040562 gaaattagtagtattgactctccactcatattggtaattgtgag 20040605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 21855169 - 21855327
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  21855169 catcatcaccatcattgtgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 21855265  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | |||||| ||||||||||||||||||| | ||| |||||||||||    
T  21855266 gaaattagcattattgactctccactcatattggtaattgtgagaagggttatgggttctaa 21855327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 17619562 - 17619422
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  17619562 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 17619466  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgag 152  Q
      |||||||  || | | |||||| ||||||||| |||||||||    
T  17619465 gaaattagcattattgactctccactcatattggaaattgtgag 17619422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 29585 - 29312
Alignment:
Q  6 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgat 105  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||    
T  29585 catcatcattaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataat 29486  T
Q  106 caaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 205  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||| ||    
T  29485 catacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttaga 29386  T
Q  206 taataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||||| || |||| |||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||    
T  29385 taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 27045688 - 27045424
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27045688 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 27045589  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| |||||    
T  27045588 acaattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataa 27045495  T
Q  209 taattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    || || |||| |||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||    
T  27045494 tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 21785836 - 21785925
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaa 101  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||||||||||||||||    
T  21785836 catcatcaccattattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaa 21785925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 22626469 - 22626562
Alignment:
Q  59 ttttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaacaattagctctaataattctccattcatattggtaattgtgag 152  Q
    ||||| |||||| ||||||||||||| || |||||||||||||| ||||| ||||||||  || | | |||||| |||||||||||||||||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgag 22626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 11296 - 11568
Alignment:
Q  8 tcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtctgaattaggtagaatgatc 106  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||| |||    
T  11296 tcatcaccaccatcaccttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatc 11395  T
Q  107 aaacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggat 206  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||    
T  11396 aaacaattagctctaataattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagat 11495  T
Q  207 aataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    |||| ||  | | |||||||||||||| ||||||||||||||||| |||| |  |||||||||| ||||||||    
T  11496 aatagttcccctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 22062904 - 22063168
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  22062904 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 22063003  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||  ||||||| || ||||||| ||||||||      |||||| |||||| |||||    
T  22063004 acaattagctctaatgattctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataa 22063097  T
Q  209 taattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    || || |||| |||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||    
T  22063098 tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 19586966 - 19587222
Alignment:
Q  8 tcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatca 107  Q
    |||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||               |||||||| ||||    
T  19586966 tcatcacccccatcatcttgtacctgtgggttaataccaacataaatcaaattttccaccacctccagatta---------------ggtagaataatca 19587050  T
Q  108 aacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggata 207  Q
    |||||||||||||||||||||||| || |||||||||||||| |||| |  |||||||||||||||| ||||||||||||||||||||||||| | ||||    
T  19587051 aacaattagctctaataattctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagata 19587150  T
Q  208 ataattttcatttatcctcttgatcctttgattcacactcacccgaaacctcttagcaataaaagtgatgat 279  Q
    ||| ||    | |||||||||||||| |||||||| |||||||| |||| || |||||||||| ||||||||    
T  19587151 atagttcctctctatcctcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 23519144 - 23519345
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||  ||| ||||||||| |||||    
T  23519144 catcatcaccatcatcatgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaa 23519243  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 208  Q
    ||||||||| ||| | | | |||   |||||||||| ||||||| | ||||||||||| ||||||||||||  ||| |||| |||| ||||| | |||||    
T  23519244 acaattagccctatttactttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagacatggtattgagggtatctaagtctagataa 23519343  T
Q  209 ta 210  Q
    ||    
T  23519344 ta 23519345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 18188962 - 18189123
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | || |||||||||||||| |||||    
T  18188962 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaa 18189061  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
     ||||||||  || | | |||||| ||||||||||||||||||| | |||||||| ||||||    
T  18189062 gcaattagcattattgactctccactcatattggtaattgtgagaagggtcatggattctaa 18189123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 17818337 - 17818194
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  17818337 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaa 17818238  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgag 152  Q
      |||||||  || | | |||||| |||||||||||||||||||    
T  17818237 gaaattagcattattgactctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 18852838 - 18852742
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||   ||||||| |||| ||||||||||||||| ||||||||||||||||| |||||    
T  18852838 catcattaccatcattttgtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatcaa 18852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29685340 - 29685293
Alignment:
Q  23 tcttgtacctgtgggttagtaccaacataaagcaaattttccaccacc 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29685340 tcttgtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 24390266 - 24390326
Alignment:
Q  10 atcatcaccatcatctt---gtacctgtgggttagtaccaacataaagcaaattttccacc 67  Q
    ||||||||||| |||||   ||||||||  |||||||||| ||||||||||||||||||||    
T  24390266 atcatcaccatgatcttcctgtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18977668 - 18977624
Alignment:
Q  23 tcttgtacctgtgggttagtaccaacataaagcaaattttccacc 67  Q
    |||||||| |||  |||||||||| ||||||||||||||||||||    
T  18977668 tcttgtacatgtttgttagtaccagcataaagcaaattttccacc 18977624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 25339498 - 25339690
Alignment:
Q  8 tcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatca 107  Q
    |||||| |||||||||| ||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||| | |||||||||||| ||||    
T  25339498 tcatcaccaccatcatcatgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatca 25339597  T
Q  108 aacaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagt 200  Q
    |||||||||| ||| | |   |||| ||||||||||||||||||||  || |||| |||||||| || |||| ||| ||||| |||| |||||    
T  25339598 aacaattagccctattgaccttccactcatattggtaattgtgagttgggccatgagttctaagaaaggacatagtggtgagggtatctaagt 25339690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 24501134 - 24500971
Alignment:
Q  26 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaacaattagctctaataa 125  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||  || | |    
T  24501134 tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga 24501035  T
Q  126 ttctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgag 189  Q
     |||||| | ||||||||||||||||| | || ||||| ||||||| ||| |||  ||||||||    
T  24501034 ctctccactaatattggtaattgtgagaagggccatggattctaagaaaaaacatggtagtgag 24500971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 1428 - 1275
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||| |||||    
T  1428 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaa 1329  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatg 162  Q
      |||||||   | | | |||||| |||||||||||||||| || | |||||||    
T  1328 gaaattagcataattgactctccactcatattggtaattgttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 18632 - 18509
Alignment:
Q  26 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaacaattagctctaataa 125  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||  |||||||  || | |    
T  18632 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 18533  T
Q  126 ttctccattcatattggtaattgt 149  Q
     |||||| ||||||||||||||||    
T  18532 ctctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 11741 - 11867
Alignment:
Q  44 ccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaacaattagctctaataattctccattcatattggt 143  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| || |||||||||||||| ||||| ||||||||  || | | |||||| ||||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  144 aattgtgagtatggtcatgggttctaa 170  Q
    ||||||||| | |||||||| ||||||    
T  11841 aattgtgagaagggtcatggattctaa 11867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 38026 - 38184
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaatgatcaa 108  Q
    |||||||||||||||  ||||||||||||||||| |||||||||   || ||||| |||||||  | ||||||||| ||||||||||||||||| |||||    
T  38026 catcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttagaattagtaatatctgaattaggtagaataatcaa 38122  T
Q  109 acaattagctctaataattctccattcatattggtaattgtgagtatggtcatgggttctaa 170  Q
      |||||||  || | | || ||| ||||||||| ||||||||| | || ||||| ||||||    
T  38123 gaaattagcattattgactcgccactcatattggaaattgtgagaagggccatggattctaa 38184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 17138 - 17029
Alignment:
Q  59 ttttccaccacctccggattagtaatgtctgaattaggtagaatgatcaaacaattagctctaataattctccattcatattggtaattgtgagtatggt 158  Q
    ||||| |||||||| | ||||||||| || |||||||||||||| ||||| ||||||||  || | | |||||| ||||||||||||||||||| | |||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  159 catgggttct 168  Q
    ||||| ||||    
T  17038 catggattct 17029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 12837 - 12927
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaat 102  Q
    |||||||||||||||  ||||||||||||||||| |||||||||   || ||||| ||||||||| |||||||||| ||| | |||||||||||    
T  12837 catcatcaccatcattatgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaat 12927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 8728 - 8818
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaat 102  Q
    |||||||||||||||  ||||| ||||||||||| |||||||||   || ||||| ||||||||| |||||||||| ||| | |||||||||||    
T  8728 catcatcaccatcattgtgtacatgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaat 8818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 8665 - 8709
Alignment:
Q  9 catcatcaccatcatcttgtacctgtgggttagtaccaacataaa 53  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||    
T  8665 catcatcaccatcattgtgtatctgtgggttagtgccaacataaa 8709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 537 - 571
Alignment:
Q  33 gtgggttagtaccaacataaagcaaattttccacc 67  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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