View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6413_low_14 (Length: 283)
Name: NF6413_low_14
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 28932927 - 28933184
Alignment:
| Q |
17 |
actaagtagtgatccacctaagagacggcgtgttcattccactcctagcggcgaaataagtacaaaaaccgatcttgttgttattccctctaaaccaatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
28932927 |
actaagtagtgatccacctaagagacggcgtgttcgttccactcctagcggcgaaataagtacaaaaaccgatcttgttgttattccctctaa-cctatc |
28933025 |
T |
|
| Q |
117 |
tttttggagtcagatgtgtgatgagatccgggataaggtaactatgttacatttctttcataataattggattgcctataatgtttctcc----attaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28933026 |
tttttggagtcagatgtgtgatgagatccgggataaggtaactatgttacatttctttcataataattggattgcctataatgtttctccattaattaag |
28933125 |
T |
|
| Q |
213 |
atatcttctctacctttatatttaggtgaaaagacatcctgtaaagaaaaagtttgatga |
272 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28933126 |
atatcttctctacc-ttacatttaggtgaaaagacatcctgtaaagaaaaagtttgatga |
28933184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 10187234 - 10187411
Alignment:
| Q |
65 |
cggcgaaataagtacaaaaaccgatcttgttgttattccctctaaaccaatctttttggagtcagatgtgtgatgagatccgggataaggtaactatgtt |
164 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||| ||| | ||||||| || ||||||||||||||||||| |
|
|
| T |
10187234 |
cggcgaaataagtacaaaaactgatcttgttgttatgccctct-aaccaatcttggtggagtaagaaggttgatgagttcagggataaggtaactatgtt |
10187332 |
T |
|
| Q |
165 |
acatttctttca------taataattggattgcctataatgtttctccattaagatatcttctctacctttatatttaggt |
239 |
Q |
| |
|
||| |||||| | |||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10187333 |
aca--actttcaagtctttcgtaattgagttgcctacaatgtctctccattaagatatcttctctaccttttcatttaggt |
10187411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 35121118 - 35120900
Alignment:
| Q |
31 |
cacctaagagacggcgtgttcattccactcctagcggcgaaataagtacaaaaaccgatcttgttgttattccctctaaaccaatctttttggagtcaga |
130 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||| |||||| ||| |
|
|
| T |
35121118 |
cacctaagagacagcctgttcattccactcctagcggcgaaacaagtacaaaaactgatcttgttgttatgccctct-aaccaatcttggtggagtaaga |
35121020 |
T |
|
| Q |
131 |
tgtgtgatgagatccgggataaggtaactatgttacatttctttcataataattggattgcctataatgtttctccattaagatatcttctctaccttta |
230 |
Q |
| |
|
|| |||||||||| ||||||||||||| ||||||| |||| | ||||||||||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
35121019 |
agtttgatgagatcagggataaggtaaccgtgttacaagtcttac---gtaattggattgcctacaatatctctccattaagatatcttctctacctttt |
35120923 |
T |
|
| Q |
231 |
tatttaggtgaaaagacatcctg |
253 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
35120922 |
catttaggtgaaaagccatcctg |
35120900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University